Factsheet for Zm00001d022067_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99675	Sorghum	extracellular	91.94	91.94
TraesCS2A01G176400.1	Wheat	extracellular	80.65	81.52
TraesCS2D01G183800.1	Wheat	extracellular	80.65	81.52
TraesCS2B01G202800.1	Wheat	extracellular, golgi	79.84	80.71
Os07t0602800-00	Rice	mitochondrion	77.96	77.75
HORVU2Hr1G032670.2	Barley	cytosol	69.09	75.59
Zm00001d012677_P012	Maize	golgi	63.98	60.87
Zm00001d033187_P001	Maize	plastid	63.17	56.49
Zm00001d050917_P002	Maize	plasma membrane	23.39	11.55
Zm00001d015609_P002	Maize	plasma membrane	22.85	11.17
Zm00001d017036_P002	Maize	plasma membrane	22.31	10.75
Zm00001d052875_P001	Maize	mitochondrion	21.77	10.44
Zm00001d022153_P006	Maize	extracellular, mitochondrion	21.24	10.17
Zm00001d031412_P001	Maize	extracellular	20.16	10.07
Zm00001d025670_P001	Maize	mitochondrion	0.81	1.96

Protein Annotations

EntrezGene:100272401	Gene3D:3.20.20.190	MapMan:35.1	UniProt:B4FNF6	EMBL:BT038644	GO:GO:0003674
GO:GO:0003824	GO:GO:0006629	GO:GO:0008081	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
InterPro:GP_PDE_dom	InterPro:IPR017946	InterPro:IPR030395	ProteinID:ONM59447.1	PFAM:PF03009	InterPro:PLC-like_Pdiesterase_TIM-brl
PFscan:PS51704	PANTHER:PTHR43620	PANTHER:PTHR43620:SF4	SUPFAM:SSF51695	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI00017B6C81	EnsemblPlantsGene:Zm00001d022067	EnsemblPlants:Zm00001d022067_P001	EnsemblPlants:Zm00001d022067_T001	SEG:seg	:

Description

Glycerophosphodiester phosphodiesterase GDPD5

Coordinates

chr7:-:169289768..169291428

Molecular Weight (calculated)

41795.3 Da

IEP (calculated)

6.193

GRAVY (calculated)

-0.365

Length

372 amino acids

Sequence
(BLAST)

001: MASLRVVSVL VLVAMAASAG GVAARPLVGG GGAWENRAPL QTSRPFNIAH RGSNGELPEE TAAAYARAID EGADFIEADI EATKDGHLVC FHDTTLDGTT
101: DVADHPEFAG RRRTLEVQWA NVTGYFVTDF TLVELKTLRA KQRWDFRDKS HNGVSPIITF DEFIDVALNA KRVVGIYPEM KNPVFMNKHV QWADGKKYED
201: KFIATLKKYG YGGKYMSPAW RARPVFVQSF APTSLVRAAG LTDSPLVFLV DDVTVRTEDT NQPYDEITSG EHLDYMKRYV VGIGPWKDTV VPPTKDNRLA
301: TPSDLVAMAH ARGLQVHPYT YRNENKFLHF DFRQDPYAEY DYWINDVGID GLFTDFPASL RRFQEWTAKN KD

Best Arabidopsis Sequence Match ( AT1G74210.1 )
(BLAST)

001: MILTRCLPLI WLSLLTVCAA GRTLHPLPVK GPKTVKLQLQ TSRPYNIAHR GSNGEIPEET TAAYLKAIEE GTDFIETDIL SSKDGVLICF HDCILDETTN
101: VASHKEFADR KRTYDVQGFN ITGFFTFDFT LKELKQLRIK QRYAFRDQQY NGMYPIITFE EFLTIARDAP RVVGIYPEIK NPVLMNQHVK WPGGKKFEDK
201: VVETLKKYGY GGSYLSKKWL KKPLFIQSFA PTSLVYISNL TDSPKVLLID DVTMPTQDTN QTYAEITSDA YFEYIKQYVV GIGPWKDTIV PVNNNYVLAP
301: TDLVKRAHAH NLQVHPYTYR NEHEFLHYNF SQDPYKEYDY WINEIGVDGL FTDFTGSLHN FQEWTSPLPD TSKSPRQLLS QIASLVLPYA KA

Arabidopsis Description

GDPD5GDPD5 [Source:UniProtKB/TrEMBL;Acc:A0A178W3R5]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.