Factsheet for TraesCS2D01G332500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G330200.1	Wheat	extracellular, plasma membrane, vacuole	98.39	98.39
TraesCS2B01G352000.1	Wheat	extracellular, plasma membrane, vacuole	97.98	97.98
HORVU2Hr1G081920.3	Barley	plasma membrane	96.24	96.24
Os04t0472300-01	Rice	extracellular, plasma membrane	83.74	84.19
EES10974	Sorghum	golgi	79.3	78.77
Zm00001d025670_P001	Maize	mitochondrion	15.59	75.82
TraesCS6D01G189300.1	Wheat	unclear	68.82	68.54
GSMUA_Achr8P25690_001	Banana	plasma membrane	63.58	62.24
PGSC0003DMT400033423	Potato	extracellular	10.35	58.78
GSMUA_Achr9P12610_001	Banana	endoplasmic reticulum, plasma membrane, plastid	61.56	58.27
PGSC0003DMT400057418	Potato	extracellular	53.36	52.72
TraesCS7D01G242500.1	Wheat	golgi, plastid, unclear	57.12	52.47
Solyc12g014570.1.1	Tomato	nucleus	52.96	52.46
PGSC0003DMT400033463	Potato	extracellular, plasma membrane	52.96	52.32
KRH73850	Soybean	endoplasmic reticulum	52.69	52.06
Solyc07g065120.2.1	Tomato	extracellular	52.69	52.06
KRH14296	Soybean	endoplasmic reticulum	52.15	51.46
GSMUA_Achr3P03920_001	Banana	cytosol	54.57	51.39
KRH46280	Soybean	cytosol	18.15	51.33
VIT_19s0090g01490.t01	Wine grape	extracellular, plasma membrane, vacuole	51.48	50.59
KRH46281	Soybean	extracellular, golgi, plasma membrane	51.34	50.2
CDY71959	Canola	extracellular, plastid, vacuole	21.91	49.7
Bra019073.1-P	Field mustard	extracellular, plasma membrane, plastid	33.33	49.6
Bra002904.1-P	Field mustard	extracellular, plasma membrane, vacuole	50.0	49.08
KRH46282	Soybean	extracellular, plasma membrane	50.0	48.88
KRG98625	Soybean	extracellular	47.31	48.75
CDY36746	Canola	plasma membrane	50.13	48.69
KRH46279	Soybean	extracellular	47.58	48.69
AT5G55480.1	Thale cress	plasma membrane	50.0	48.56
Bra028979.1-P	Field mustard	plasma membrane	49.73	48.3
CDX94294	Canola	extracellular, plasma membrane, vacuole	49.06	48.22
CDX89312	Canola	extracellular, plasma membrane, vacuole	49.06	48.22
Bra026409.1-P	Field mustard	extracellular, plasma membrane, vacuole	49.06	48.22
CDY17323	Canola	plasma membrane	49.73	48.18
KRG98622	Soybean	extracellular, golgi, plasma membrane	48.39	48.06
AT4G26690.1	Thale cress	extracellular, vacuole	48.92	47.96
Bra035244.1-P	Field mustard	plasma membrane	48.66	47.76
Bra004101.1-P	Field mustard	extracellular, plasma membrane, vacuole	47.58	47.64
CDY11996	Canola	plasma membrane	49.19	47.35
CDY61647	Canola	extracellular, plasma membrane	47.85	47.15
Bra019092.1-P	Field mustard	extracellular, plasma membrane, vacuole	45.43	47.14
Bra034040.1-P	Field mustard	extracellular	8.6	47.06
CDY46687	Canola	extracellular, plasma membrane, vacuole	45.3	47.0
CDY13237	Canola	extracellular, plasma membrane, vacuole	47.85	46.9
CDY45656	Canola	extracellular, golgi, plasma membrane	41.13	46.86
CDY72472	Canola	mitochondrion	23.66	46.81
CDY29432	Canola	cytosol, peroxisome	37.37	46.64
CDY12605	Canola	extracellular, vacuole	44.76	46.51
CDX92806	Canola	extracellular, plasma membrane, vacuole	44.76	46.51
Bra034037.1-P	Field mustard	extracellular, vacuole	44.49	46.23
CDY19634	Canola	plasma membrane	44.76	45.87
AT1G66970.2	Thale cress	plasma membrane	48.39	45.86
CDY60410	Canola	extracellular	8.2	44.85
CDY58867	Canola	plasma membrane	43.15	44.46
CDY12599	Canola	cytosol	24.33	44.36
AT3G20520.1	Thale cress	plasma membrane	43.41	44.31
CDX86807	Canola	cytosol	13.44	43.48
CDX82242	Canola	cytosol	25.4	42.66
Bra035208.1-P	Field mustard	extracellular, golgi, plastid	15.32	41.76
Bra035774.1-P	Field mustard	plasma membrane	45.43	41.37
CDX86766	Canola	plasma membrane	34.68	40.76
CDY42328	Canola	cytosol	14.11	40.7
TraesCS6D01G163200.1	Wheat	extracellular, plasma membrane	40.86	40.59
TraesCS1D01G357000.1	Wheat	extracellular, plasma membrane	41.4	40.47
PGSC0003DMT400033459	Potato	endoplasmic reticulum	13.84	39.77
CDY36036	Canola	plasma membrane	44.09	38.63
Bra001790.1-P	Field mustard	plasma membrane	43.28	38.52
Bra035209.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	46.24	35.68
CDX86765	Canola	extracellular, mitochondrion, vacuole	7.12	31.93
AT1G66980.2	Thale cress	plasma membrane	47.72	30.95
TraesCS2D01G183800.1	Wheat	extracellular	13.17	26.63
CDY14478	Canola	plasma membrane	46.77	26.48
CDY60415	Canola	plasma membrane	41.8	26.22
TraesCS3D01G299100.1	Wheat	extracellular, golgi	12.37	23.53
TraesCS1D01G114700.2	Wheat	extracellular	11.69	22.77
TraesCS1D01G114600.1	Wheat	extracellular, vacuole	11.29	21.99

Protein Annotations

Gene3D:3.20.20.190	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006629	GO:GO:0008081
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:GP_PDE_dom	InterPro:IPR017946	InterPro:IPR030395
PFAM:PF03009	InterPro:PLC-like_Pdiesterase_TIM-brl	PFscan:PS51704	PANTHER:PTHR43620	PANTHER:PTHR43620:SF2	SUPFAM:SSF51695
SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS2D01G332500	EnsemblPlants:TraesCS2D01G332500.1	TIGR:cd08603	TIGR:cd08604	SEG:seg

Description

No Description!

Coordinates

chr2D:+:425740741..425745885

Molecular Weight (calculated)

81049.6 Da

IEP (calculated)

4.834

GRAVY (calculated)

-0.026

Length

744 amino acids

Sequence
(BLAST)

001: MGSGRVCSVV ASVVLLWLGV AAAQGDSPWK TLSGNAPAII AKGGFSGLFP DSSEFAYQFA MIASSPDTIL YCDVRLTKDG LGVCLPDIKM DNCTNIPDFY
101: PKGKKSYLVN GVSTTGWFSV DYNGTELSQV SLKQSIFSRT PRFDPSFFPL LAVEDVASKF KPPGMWLNIQ HDGFYSQFNM SMRKYILSVS RRVIVDYISS
201: PEASFLTSIS GRVSNNTKLV FRFLDEATLE PSTKETYGSM LKNLTFIKTF ASGILVPKKY IWPVSPDNYL QPYTSIVDDA HKAGLEIYAA DFANDFALSY
301: NHSYDPLAES LSFIDNGAFS VDGILTDFPV TPSEAIGCFA NLNKSNTDHG KPLIISHNGA SGDYPGCTDL AYQKAVDDGA DVIDCPVQVT KDGIPVCMGS
401: INLMDSTTVA KSPFASQAAV MKDIESVLGV FTFNLTWDDI VKNLKPKIST PLSTFSLDRN PRYRNAGNFM RLSDFLDFSK DKDLSGIMIS IEHAAFLAEE
501: LGFDMVDAVI KALDDSGYNK QTAQKVMIQS TNSSVLVKLK QQTKYDLVYM INEDVSDAAP SSLAGIKKFA DAVSVETSSV FPENRHFTSH QTDLVESLQT
601: AGLSVYAYTL MNEFVAQPYD FFSDATAEII AYVQGAGVDG LITDFPATAR RYKSNTCMNM GNKTPSFMAP PRPGDLLQLI SKPAQPPALA PMPLLMDSDV
701: SEPPLPPARL NNGTTAPAPS SAPRMQTRIP FLVTLAMLCV WATV

Best Arabidopsis Sequence Match ( AT5G55480.1 )
(BLAST)

001: MINMRDNPTM HVLQASKFLF LALILIQLLS TQLFAQRSKS PWQTLTGDAP LVIARGGFSG LLPDSSLDAY SFVSQTSVPG AVLWCDVQLT KDAIGLCFPD
101: VKMMNASNIQ DVYPKRKTSY LLNGVPTQDW FTIDFNFKDL TKVILKQGIL SRSAAFDGNS YGISTVKDIS TQLKPEGFWL NVQHDAFYAQ HNLSMSSFLL
201: SISKTVIIDY LSSPEVNFFR NIGRRFGRNG PKFVFRFLEK DDVEVSTNQT YGSLAGNLTF LKTFASGVLV PKSYIWPIES QYLLPRTSFV QDAHKAGLEV
301: YASGFGNDFD LAYNYSFDPL AEYLSFMDNG DFSVDGLLSD FPLTASSAVD CFSHLGSNAS SQVDFLVISK NGASGDYPGC TDLAYTKAIK DGADVIDCSL
401: QMSSDGIPFC LSSINLGEST NVVQSPFRNR STTVPEIGSL PGIYSFSLAW SEIQTLRPAI ENPYSREFTM FRNPRERSSG KFVSLSDFLN LAKNSSSLTG
501: VLISVENATY LREKQGLDAV KAVLDTLTEA GYSNKTTTTR VMIQSTNSSV LIDFKKQSRY ETVYKVEETI RDILDTAIED IKKFADAVVI SKKSVFPTSE
601: SFTTGQTKLV ERLQKFQLPV YVEVFRNEFV SQPWDFFADA TVEINSHVTG AGINGTITEF PLTAARYKRN SCLTRKDVPP YMIPVQPAGL LTIVSPASLP
701: PAEAPSPVFT DADVTEPPLP PVSARAPTTT PGPQSTGEKS PNGQTRVALS LLLSAFATVF ASLLLL

Arabidopsis Description

GDPDL4Glycerophosphodiester phosphodiesterase GDPDL4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJ62]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.