Factsheet for PGSC0003DMT400023562

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g083350.2.1	Tomato	cytosol	94.66	94.66
VIT_16s0098g01890.t01	Wine grape	cytosol	72.07	71.45
GSMUA_Achr7P14510_001	Banana	cytosol	57.24	65.74
KRH64453	Soybean	cytosol	65.34	65.01
Bra026464.1-P	Field mustard	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	51.03	63.52
Bra029014.1-P	Field mustard	cytosol	15.52	63.38
AT5G24240.2	Thale cress	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	62.24	62.89
CDX87135	Canola	cytosol	50.52	62.88
CDY19844	Canola	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	50.52	62.88
PGSC0003DMT400000336	Potato	cytosol	61.9	62.87
Bra009742.1-P	Field mustard	cytosol	60.69	61.32
GSMUA_Achr9P00160_001	Banana	cytosol	53.62	61.1
GSMUA_Achr2P19790_001	Banana	cytosol	57.41	60.99
CDX88085	Canola	cytosol	60.34	60.98
Bra019161.1-P	Field mustard	cytosol	60.34	60.98
Bra006947.1-P	Field mustard	cytosol	60.34	60.98
CDX80424	Canola	cytosol	60.17	60.8
GSMUA_Achr6P22610_001	Banana	cytosol	52.76	60.35
PGSC0003DMT400018139	Potato	endoplasmic reticulum	58.28	59.51
GSMUA_Achr8P19700_001	Banana	cytosol	51.38	59.36
PGSC0003DMT400031664	Potato	cytosol	57.93	57.63
Os02t0290500-01	Rice	cytosol	55.34	56.81
Zm00001d037056_P001	Maize	cytosol	55.34	56.51
Os06t0340600-02	Rice	cytosol, endoplasmic reticulum	55.17	56.34
EER88404	Sorghum	cytosol, plastid	55.17	56.34
Os05t0590100-01	Rice	extracellular	56.38	55.8
TraesCS7B01G243500.1	Wheat	cytosol	54.48	55.54
TraesCS7D01G340200.1	Wheat	cytosol	54.31	55.36
HORVU7Hr1G081930.1	Barley	cytosol	54.31	55.36
TraesCS7A01G332000.1	Wheat	cytosol	54.31	55.26
Zm00001d046016_P001	Maize	cytosol, plastid	53.97	55.11
Zm00001d009741_P001	Maize	plastid	52.07	54.61
GSMUA_Achr6P26590_001	Banana	cytosol	50.86	54.23
EES06700	Sorghum	endoplasmic reticulum	51.9	53.56
KXG22662	Sorghum	cytosol	52.93	52.75
Bra012402.1-P	Field mustard	cytosol	56.38	28.14
PGSC0003DMT400050546	Potato	cytosol	28.62	26.43
PGSC0003DMT400004869	Potato	cytosol	27.59	25.52
PGSC0003DMT400018507	Potato	cytosol, plastid	23.97	24.56

Protein Annotations

EntrezGene:102605976	MapMan:27.5.2.3	Gene3D:3.10.20.90	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005777	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008289
GO:GO:0009719	GO:GO:0009737	GO:GO:0009791	GO:GO:0009908	GO:GO:0009909	GO:GO:0009987
GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0035091	GO:GO:1902074	InterPro:IPR000403
InterPro:IPR000626	InterPro:Kinase-like_dom_sf	UniProt:M1AIL4	PFAM:PF00240	PFAM:PF00454	EnsemblPlantsGene:PGSC0003DMG400009125
PGSC:PGSC0003DMG400009125	EnsemblPlants:PGSC0003DMT400023562	InterPro:PI3/4_kinase_cat_dom	PRINTS:PR00348	PFscan:PS50053	PANTHER:PTHR10666
PANTHER:PTHR10666:SF90	SMART:SM00213	SUPFAM:SSF54236	SUPFAM:SSF56112	UniParc:UPI000296F475	InterPro:Ubiquitin
InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	RefSeq:XP_006350554.1	RefSeq:XP_015165626.1	:	:

Description

Ubiquitin [Source:PGSC_GENE;Acc:PGSC0003DMG400009125]

Coordinates

chr3:+:48441137..48444178

Molecular Weight (calculated)

63801.6 Da

IEP (calculated)

6.739

GRAVY (calculated)

-0.168

Length

580 amino acids

Sequence
(BLAST)

001: MSIATVALSP VHEDHLNLAS CLAGQYGSRS NDSILIFLTV GGSVIPLRVK ESDSIASVKS KIQTFKGFFV KRQKLVFDGK ELARNNSRVG DYGVADGNIL
101: HLVLRLSDLQ AITVRTVCGQ EFEFHVDRKR NVGYVKQQIA KKGRDFRDLR EQELILDGVE LEDKRLINDI CKSNDAVIHL LVRKSAKVQA QAVKTDFEVS
201: VVASASNEKG SDAVEKLQER FHAVGLNTVP RSFILEPLIV NPKITPSPVV KQLIGSTFDG IAKGHQPIRS SEGSGGAYFM LDSCAQNYVS VFKPTDEEPM
301: AVNNPRGLPL SVDGEGLKKG TRVGEGAFRE VAAYILDHPK SGPRSTCCDE KGFAGVPPTV MVKCFHTGFN HAEGCEYSSK SLKIGSLQMF RKNCGSCEDF
401: GPLAFPVDDV HRISVLDIRL ANADRHAGNI LVQKDDKDGQ LVLIPIDHGY CLPENFEDCT FDWLYWPQAQ QPYSAETIAY INSLDAEKDI ELLKFHGWTM
501: SLACARVLRI STMLLKKGAE RGLTPSAIGG IMCRETLKKE SIIEQIVEEA EESVLPGTSE AAFLQSVSVI MDRRLGDLIK

Best Arabidopsis Sequence Match ( AT5G24240.2 )
(BLAST)

001: MSVASVALSP ALEELVNFPG IIGRFGFNLD DPILVFLTIA GSVIPKRVME SDSIASVKLR IQSIKGFFVK KQKLLYDGRE VSRNDSQIRD YGLADGKLLH
101: LVIRLSDLQA ISVRTVDGKE FELVVERSRN VGYVKQQIAS KEKELGIPRD HELTLDGEEL DDQRLITDLC QNGDNVIHLL ISKSAKVRAK PVGKDFEVFI
201: EDVNHKHNVD GRRGKNISSE AKPKEFFVEP FIVNPEIKLP ILLKELISST LEGLEKGNGP IRSSDGSGGA YFMQDPSGHK YVSVFKPIDE EPMAVNNPHG
301: QPVSVDGEGL KKGTQVGEGA IREVAAYILD YPMTGPRTFP HDQTGFAGVP PTTMVKCLHK DFNHPNGYSF SPENTKIGSL QMFVSNVGSC EDMGYRVFPV
401: DQVHKISVLD IRLANADRHA GNILVSRDGK DGQMVLTPID HGYCFPNKFE DCTFEWLYWP QAKEPYSSET LEYIKSLDPE KDIELLRFHG WEIPPSCTRV
501: LRISTMLLKK GSAKGLTPFT IGSIMCRETL KEESVIEQII HDAEAIVPTE TTEDEFISTV SAIMDNRLDQ YAWN

Arabidopsis Description

PI4KG3Phosphatidylinositol 4-kinase gamma 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNF8]
SUBAcon: [extracellular,endoplasmic reticulum,vacuole,cytosol,plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.