Factsheet for PGSC0003DMT400025322

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
extracellular 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076000	Potato	cytosol, nucleus, plastid	18.6	66.67
Solyc07g016170.2.1	Tomato	plastid	96.01	29.49
GSMUA_Achr3P05470_001	Banana	cytosol	67.11	23.93
OQU77002	Sorghum	cytosol, plasma membrane, plastid	65.78	23.32
AT3G42850.2	Thale cress	plastid	67.11	20.76
Bra002849.1-P	Field mustard	plastid	66.45	20.58
CDY17385	Canola	cytosol, plastid	66.45	20.58
GSMUA_Achr10P...	Banana	mitochondrion	67.77	20.54
CDY57963	Canola	cytosol	65.78	20.39
Os02t0141300-01	Rice	cytosol, plasma membrane	66.45	20.08
Zm00001d014689_P006	Maize	plastid	65.12	19.98
TraesCS6A01G112800.1	Wheat	golgi, unclear	65.12	19.86
TraesCS6D01G102400.1	Wheat	cytosol	65.12	19.82
TraesCS6B01G141400.1	Wheat	cytosol	65.12	19.82
EES06260	Sorghum	cytosol	65.78	19.74
TraesCS7A01G417000.1	Wheat	cytosol	64.45	19.68
HORVU7Hr1G096680.5	Barley	cytosol	64.12	19.63
Zm00001d053886_P001	Maize	cytosol	64.78	19.6
TraesCS7D01G410100.1	Wheat	cytosol	64.45	19.52
KRH04897	Soybean	cytosol	65.45	19.5
KRH16180	Soybean	cytosol	65.12	19.39
TraesCS7B01G317000.1	Wheat	cytosol	63.46	19.27
Os06t0702500-01	Rice	plastid	63.46	19.22
HORVU6Hr1G020380.1	Barley	mitochondrion	64.12	19.09
VIT_11s0065g00290.t01	Wine grape	cytosol	18.27	9.21
Zm00001d044084_P001	Maize	plastid	1.99	2.68
Zm00001d052587_P001	Maize	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400025322	EnsemblPlantsGene:PGSC0003DMG400009774	Gene3D:3.30.70.890	InterPro:GHMP_kinase_C_dom	InterPro:GHMP_kinase_C_sf	InterPro:IPR036554
PANTHER:PTHR10457	PANTHER:PTHR10457:SF19	PFAM:PF08544	PGSC:PGSC0003DMG400009774	SEG:seg	SUPFAM:SSF55060
UniParc:UPI000295A1D2	UniProt:M1ALA5	MapMan:35.1	:	:	:

Description

Arabinose kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400009774]

Coordinates

chr7:+:9119438..9124150

Molecular Weight (calculated)

32765.7 Da

IEP (calculated)

6.393

GRAVY (calculated)

-0.267

Length

301 amino acids

Sequence
(BLAST)

001: MDQMASACGE ANKLLAMVCQ PAEVLGLVDI PPTIRFWGID SGIRHSVGGS DYKSVRVGAF MGKKIIKFSA SVELCSSLSN ISTQQINRSN PDDADEDGKN
101: LLETEASLDY LCNLSAHRYE ASYATRLPES LSGQEFVEKY LDHDDSVTTI DKESNYAVRA PTRHPIYENF RVKAFKALLS ATPSNYQLSA LGELMYQCHF
201: SYSACGLASN GTDRLVNLVQ EMQHSKSSES EGGTLFGAKI TGGGSGGTVC VIGRNCLRSN EQLVEIQQRY KTATGFLPYV FEGSSPGAAK FGHLQIRLLK
301: S

Best Arabidopsis Sequence Match ( AT4G16130.1 )
(BLAST)

0001: MSERAKLQKK KKVTEDLLDS LLLLPPWRNF AISQSHQSII ESSSQRLPEK MRIDENEGVS ASSKHLVFAY YVTGHGFGHA TRVVEVVRHL IAAGHDVHVV
0101: TGAPDFVFTS EIQSPRLKIR KVLLDCGAVQ ADALTVDRLA SLEKYVETAV VPRAEILETE VEWLHSIKAD FVVSDVVPVA CRAAADAGIR SVCVTNFSWD
0201: FIYAEYVMAA GYHHRSIVWQ IAEDYSHCEF LIRLPGYCPM PAFRDVIDVP LVVRRLHKSR KEVRKELGIA EDVNVVILNF GGQPSGWNLK ETSLPTGWLC
0301: LVCGASETLE LPPNFIKLAK DAYTPDIIAA SDCMLGKIGY GTVSEALSYK VPFVFVRRDY FNEEPFLRNM LEFYQCGVEM IRRDLLMGQW TPYLERAVSL
0401: KPCYEGGING GEIAAHILQE TAIGRHCASD KLSGARRLRD AIILGYQLQR VPGRDIAIPE WYSRAENELG QSAGSSPTVQ ANENNSLVES CIDDFDILQG
0501: DVQGLSDTCT FLKSLAMLDA IHDSEKSTEK KTVRERKAAG GLFNWEEEIF VARAPGRLDV MGGIADYSGS LVLQMPIREA CHVAVQRNLP GKHRLWKHAQ
0601: ARQQAKGQVP TPVLQIVSYG SEISNRAPTF DMDLSDFMDG DEPISYEKAR KFFAQDPAQK WAAYVAGTIL VLMIELGVRF EDSISLLVSS AVPEGKGVSS
0701: SAAVEVASMS AIAAAHGLSI DPRDLAILCQ KVENHIVGAP CGVMDQMTSS CGEANKLLAM ICQPAEVVGL VEIPNHVRFW GIDSGIRHSV GGADYRSVRV
0801: GAYMGRKMIK SMASSILSPS ASSANGGNPE ELEDEGIDLL EAEASLDYLC NLSPHRYEAR YADKLPDIML GQTFIEEYAD HDDPVTVIDQ KRSYSVKAPA
0901: RHPIYENFRV KTFKALLTSA TSDEQLTALG GLLYQCHYSY SACGLGSDGT NRLVQLVQGM QHNKSNSEDG TLYGAKITGG GSGGTVCVVG RNSLRSSQQI
1001: LEIQQRYKAA TGYLPLIFEG SSPGAGKFGY LRIRRRISL

Arabidopsis Description

ARA1L-arabinokinase [Source:UniProtKB/Swiss-Prot;Acc:O23461]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.