Factsheet for PGSC0003DMT400026261

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
golgi 5
plasma membrane 5
endoplasmic reticulum 5
vacuole 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

extracellular: 24773703

msms PMID: 24773703 doi

T Bengtsson, D Weighill, E Proux-Wéra, F Levander, S Resjö, DD Burra, LI Moushib, PE Hedley, E Liljeroth, D Jacobson, E Alexandersson, E Andreasson

Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Box 102, SE-230 53 Alnarp, Sweden. erik.alexandersson@slu.se.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g098740.1.1	Tomato	extracellular	95.45	94.97
PGSC0003DMT400026293	Potato	vacuole	38.38	36.54
PGSC0003DMT400039353	Potato	extracellular	33.84	32.68
GSMUA_Achr1P01860_001	Banana	extracellular	31.82	31.5
GSMUA_Achr5P19420_001	Banana	extracellular	34.34	30.63
TraesCS2B01G392500.1	Wheat	golgi	29.8	29.21
TraesCS2A01G375400.1	Wheat	extracellular, vacuole	29.8	29.06
PGSC0003DMT400039535	Potato	extracellular	30.3	28.85
PGSC0003DMT400069586	Potato	extracellular	29.29	28.71
PGSC0003DMT400069587	Potato	vacuole	29.29	27.62
Os04t0526600-01	Rice	extracellular	27.78	27.5
PGSC0003DMT400069321	Potato	extracellular	23.23	27.38
TraesCS2D01G371800.1	Wheat	extracellular	27.78	27.09
PGSC0003DMT400075938	Potato	extracellular	30.3	26.91
PGSC0003DMT400069588	Potato	extracellular	27.27	26.47
PGSC0003DMT400026280	Potato	extracellular	29.29	26.01
HORVU2Hr1G090750.1	Barley	extracellular	15.66	25.41
PGSC0003DMT400026286	Potato	extracellular, vacuole	28.79	25.22
PGSC0003DMT400035621	Potato	extracellular	27.78	24.44
PGSC0003DMT400026271	Potato	vacuole	27.78	24.23
Zm00001d002960_P001	Maize	extracellular	18.18	23.68
KXG23922	Sorghum	extracellular	25.25	23.04
PGSC0003DMT400026262	Potato	vacuole	28.28	22.86
PGSC0003DMT400069324	Potato	extracellular	22.22	22.68
EES12537	Sorghum	vacuole	22.73	19.57

Protein Annotations

EntrezGene:102592480	Gene3D:2.80.10.50	MapMan:35.1	GO:GO:0003674	GO:GO:0004866	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010951	GO:GO:0019538	GO:GO:0030234	MEROPS:I03.030
InterPro:Kunitz_inhibitor_STI-like_sf	UniProt:M1AMX7	PFAM:PF00197	EnsemblPlantsGene:PGSC0003DMG400010131	PGSC:PGSC0003DMG400010131	EnsemblPlants:PGSC0003DMT400026261
PRINTS:PR00291	PANTHER:PTHR33107	PANTHER:PTHR33107:SF5	InterPro:Prot_inh_Kunz-lg	SMART:SM00452	SUPFAM:SSF50386
SignalP:SignalP-noTM	UniParc:UPI000294BC3F	RefSeq:XP_006353918.1	:	:	:

Description

Nb cell deth marker [Source:PGSC_GENE;Acc:PGSC0003DMG400010131]

Coordinates

chr3:+:43970657..43971412

Molecular Weight (calculated)

21581.2 Da

IEP (calculated)

8.461

GRAVY (calculated)

0.132

Length

198 amino acids

Sequence
(BLAST)

001: MKILLLSCFL YFTLFQIIKS EPVLDTSNEQ VRPGYTYYIL PASAGNGGGL TLAKGENGSC PLDVFQARNS QSVGIPLKFL MVNSSAGLVI DENEDINIKF
101: AARRYVSICN VSTVWKIEDG IVTTGGIKGG SENGTSTSLF TIQKYEDAYA LQYCPRATGC SFICPRLLCG YIGILPAENG SRHLAVNRPV FKIVFRKA

Best Arabidopsis Sequence Match ( AT1G73330.1 )
(BLAST)

001: MKATISITTI FLVVALAAPS LARPDNHVED SVGRLLRPGQ TYHIVPANPE TGGGIFSNSE EICPLDIFQS NNPLDLGLPI KFKSELWFVK EMNSITIEFE
101: APNWFLCPKE SKGWRVVYSE EFKKSLIIST GGSSNPSGFQ IHRVDGGAYK IVYCTNISTT TCMNVGIFTD ISGARRLALT SDEALLVKFQ KAATPKADLK
201: TKLRMFPFY

Arabidopsis Description

ATDR4Dr4 protein [Source:UniProtKB/TrEMBL;Acc:Q39091]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.