Factsheet for PGSC0003DMT400054356

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
extracellular 2
cytosol 2
mitochondrion 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	extracellular
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0515g00020.t01	Wine grape	cytosol	55.86	60.14
PGSC0003DMT400065023	Potato	cytosol, endoplasmic reticulum	32.75	31.51
PGSC0003DMT400016161	Potato	cytosol	21.36	31.2
PGSC0003DMT400047578	Potato	plasma membrane	31.98	30.93
PGSC0003DMT400094852	Potato	cytosol	28.92	29.14

Protein Annotations

Gene3D:1.10.8.430	EntrezGene:102587398	Gene3D:3.40.50.300	Gene3D:3.80.10.10	MapMan:35.1	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0006950	GO:GO:0006952	GO:GO:0008150
GO:GO:0043531	InterPro:IPR032675	InterPro:LRR_dom_sf	UniProt:M1BW62	InterPro:NB-ARC	InterPro:P-loop_NTPase
PFAM:PF00931	EnsemblPlantsGene:PGSC0003DMG400021098	PGSC:PGSC0003DMG400021098	EnsemblPlants:PGSC0003DMT400054356	PRINTS:PR00364	PANTHER:PTHR43886
InterPro:RX-like_CC	SUPFAM:SSF52058	SUPFAM:SSF52540	UniParc:UPI000295EAA6	RefSeq:XP_006352978.1	SEG:seg

Description

Nbs-lrr resistance protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021098]

Coordinates

chr2:-:29536749..29539812

Molecular Weight (calculated)

104863.0 Da

IEP (calculated)

8.779

GRAVY (calculated)

-0.156

Length

913 amino acids

Sequence
(BLAST)

001: MAEAAIIFFL RRLGYQLIQE GNVLSGVQDE IEWMKKEFEA MVAFLKDADK RQQRDETVAG WVKEVRILAF NAEDVIDEFL IQMAATHWNS LYFFKYLKIR
101: YQIGSHIRKL KKQVIEVKER KDRYVINGLM MCEDALAASS YRGTGGMSSR GPGAASPFVR EDDIVGIEHD VEQLMKLVLE GNVKNFLAVS VFGMGGLGKT
201: TLVKEVFKKS KALFDCHSWV FVSQSCNLKD VLKHILFGFI ASRGEPALDV MGAMDEGWLL ERINDYLQDK KYLLVLDDIW DDNLWEELKH AFPRRKGRII
301: ITTRLRGIAS PLEDNFHIYD LQPLPYELSW RIFCKKAFRS SQGTCPDDLK EFAEAIVRKC GGLPLAIVAI GGLLSCKGRN TRVWQSVLDT LDWEFNHNRD
401: IERLNKALLF SYIHLPFYLK YCFLYLGLFP EDYEIGRKRL IRMWVAEGFV EGTAQRTEEE VANHYFVQLT DRSMIQAVTI HARDVVKACK LHDLVRDVAN
501: QMLQEEKFGS IIEEVDKTIQ ERQRRLAIYE DADSIPSDIS KLNLRSLLFF RINELSFSAL QKLLRQLRLV RVVDLQYAPL EKLPNEIGNL IHLRYLDLRG
601: TLINELPKSV KNLRNLQTLD VRNTEVKHLP AGINELQHLR HLLLSSFRDR ENGFVKMASG GKDFVKLQTL SGIESDEDLV KQLRSLTSLR KVYIGKMTQA
701: NSGDFCQSLE RMSKLRSLTV LSESPFEQNI QMESLTKSTK HLEKLKLQVH MKKLPGWFDS LSCLHSLYLF KNFLTEDPFP ILGKLPSLAI LTLASSAYVN
801: SIVNIPPGGF PKLKLLRILG MENWTTWMPI EKGSMPEIQF LLIANCPRLT NLPDGFNHLT SLDDLTLMGM SLFFAHKLQS RDKWKVTHVK EVSIISEVNG
901: QIVKKKLNTP LVN

Best Arabidopsis Sequence Match ( AT5G48620.6 )
(BLAST)

001: MAEGFVSFGL EKLWDLLSRE SERLQGIDEQ LDGLKRQLRS LQSLLKDADA KKHGSDRVRN FLEDVKDLVF DAEDIIESYV LNKLRGEGKG VKKHVRRLAR
101: FLTDRHKVAS DIEGITKRIS DVIGEMQSFG IQQIIDGVRS LSLQERQRVQ REIRQTYPDS SESDLVGVEQ SVEELVGHLV ENDIYQVVSI AGMGGIGKTT
201: LARQVFHHDL VRRHFDGFAW VCVSQQFTLK HVWQRILQEL QPHDGNILQM DESALQPKLF QLLETGRYLL VLDDVWKKED WDRIKAVFPR KRGWKMLLTS
301: RNEGVGIHAD PTCLTFRASI LNPEESWKLC ERIVFPRRDE TEVRLDEEME AMGKEMVTHC GGLPLAVKAL GGLLANKHTV PEWKRVSDNI GSQIVGGSCL
401: DDNSLNSVNR ILSLSYEDLP THLKHRFLYL AHFPEDSKIY TQDLFNYWAA EGIYDGSTIQ DSGEYYLEEL VRRNLVIADN RYLSLEFNFC QMHDMMREVC
501: LSKAKEENFL QIIKDPTSTS TINAQSPSRS RRFSIHSGKA FHILGHRNNP KVRSLIVSRF EEDFWIRSAS VFHNLTLLRV LDLSRVKFEG GKLPSSIGGL
601: IHLRYLSLYG AVVSHLPSTM RNLKLLLFLN LRVDNKEPIH VPNVLKEMLE LRYLSLPQEM DDKTKLELGD LVNLEYLWYF STQHSSVTDL LRMTKLRNLG
701: VSLSERCNFE TLSSSLRELR NLEMLNVLFS PEIVMVDHMG EFVLDHFIHL KQLGLAVRMS KIPDQHQFPP HLAHIHLVHC VMKEDPMPIL EKLLHLKSVA
801: LSYGAFIGRR VVCSKGGFPQ LCALGISGES ELEEWIVEEG SMPCLRTLTI HDCEKLKELP DGLKYITSLK ELKIREMKRE WKEKLVPGGE DYYKVQHIPD
901: VQFINCDL

Arabidopsis Description

RPP8L4Probable disease resistance RPP8-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJK8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.