Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 3
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g086810.2.1 | Tomato | nucleus | 96.21 | 95.1 |
| PGSC0003DMT400016161 | Potato | cytosol | 62.38 | 94.72 |
| VIT_02s0012g02720.t01 | Wine grape | cytosol, extracellular | 50.68 | 51.66 |
| VIT_05s0020g04930.t01 | Wine grape | cytosol | 28.98 | 51.21 |
| KRH74294 | Soybean | cytosol | 50.47 | 50.63 |
| KRH39626 | Soybean | cytosol | 50.37 | 50.42 |
| KRH74292 | Soybean | cytosol | 48.05 | 48.82 |
| KRH39629 | Soybean | cytosol | 47.31 | 47.92 |
| GSMUA_Achr8P25780_001 | Banana | cytosol | 41.41 | 42.95 |
| PGSC0003DMT400094852 | Potato | cytosol | 35.41 | 37.09 |
| Os08t0424700-00 | Rice | cytosol | 34.04 | 35.61 |
| PGSC0003DMT400047578 | Potato | plasma membrane | 32.77 | 32.94 |
| PGSC0003DMT400054356 | Potato | extracellular | 31.51 | 32.75 |
Protein Annotations
| Gene3D:3.40.50.300 | Gene3D:3.80.10.10 | MapMan:35.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0006950 | GO:GO:0006952 | GO:GO:0008150 | GO:GO:0043531 | InterPro:IPR032675 | InterPro:LRR_dom_sf |
| UniProt:M1CD99 | InterPro:NB-ARC | InterPro:P-loop_NTPase | PFAM:PF00931 | EnsemblPlantsGene:PGSC0003DMG400025259 | PGSC:PGSC0003DMG400025259 |
| EnsemblPlants:PGSC0003DMT400065023 | PRINTS:PR00364 | PANTHER:PTHR43886 | PANTHER:PTHR43886:SF30 | InterPro:RX-like_CC | SUPFAM:SSF52058 |
| SUPFAM:SSF52540 | UniParc:UPI0002956D2F | SEG:seg | : | : | : |
Description
NBS-LRR type disease resistance protein [Source:PGSC_GENE;Acc:PGSC0003DMG400025259]
Coordinates
chr1:+:66306351..66310538
Molecular Weight (calculated)
108955.0 Da
IEP (calculated)
7.625
GRAVY (calculated)
-0.131
Length
949 amino acids
Sequence
(BLAST)
(BLAST)
001: MADCAVVFLL DKLTNLLAEE AILLQGVKHD IQYIKDELER MIAFLGVADA FEEGDAEVKV WVRQVRDVAN DIEDVLDESM LLSYDHHYRG SCCFIAKLVF
101: SIRNIKFRHK LVIEIQAIKS RVDNIAMGHH RYRYKFYVPE QGSYSNHAYD TANDRRGDAL LLEEAELVGI ENPTQQLIGW LVEDDPRLKV VSVVGMGGSG
201: KTTLVKKVYE DAAVKKNFSS LAWITVSKSF KVEEVLKDMI QQLYDEVKQP APEGLNTMSS NRLKTIAKVF LQSRTYVLVF DDVWTIQAWE AIRHALPDVN
301: NGSRVILTTR LLDVASFCSI ETNGYVYEVK PLSTEESWIL FCQKAFHGYS CPSHLESISR NILKKCGGLP LAVVAVGGVL ATKNRNNIRE WGMLNHSLGP
401: ELDSNDKFES MRIVLLLSFN DLPYYLKPCF LYLSIYPEDH LIERNTLIYR WITEGFVKQK VRRTVEDVAD SYLNELINRS LIHPVQYNDD GSMKLGRIHD
501: LYRELILSKS RDDNFTATVD EHNKLWPEKT RWLSMHGMLG NLQVKRSVTK LRSLLTFGVA DPQSLSCISQ VLGSSRMLRV LDLRGAPLNM IPETVFQLFH
601: LRYLSLRNTN VKVLPRSIGR LKQLEILDLK QTYVTELPVE ILKLENLRHL LVYSHVSYSY LPYNCSPGFK AFRGIGALRA LQKLVYIEAT PGSGILKEVG
701: MLGELRRLCI LKLRKEDGWT VCSSIQKLHK LESLNLKSVE EHEILDLSYL SSPPPLLQRL YLTGHIVMLP AWIQDLNSLV KIYFRWTHLT EDPLKYLQDL
801: PNLVHLEFLV GYTGKELYFE QGKFQRLKLL NLDKLEGLRQ VTIGEGAVPH LEKLVIQRCA LLETVPTGIE YLLNLKVLEF FDMPDEFIMT LRPEKLGADA
901: WKVSHIPEVF YTYWRDGCWM VHSLKEKEKN QISDQSGAVT RTYGRRNSL
101: SIRNIKFRHK LVIEIQAIKS RVDNIAMGHH RYRYKFYVPE QGSYSNHAYD TANDRRGDAL LLEEAELVGI ENPTQQLIGW LVEDDPRLKV VSVVGMGGSG
201: KTTLVKKVYE DAAVKKNFSS LAWITVSKSF KVEEVLKDMI QQLYDEVKQP APEGLNTMSS NRLKTIAKVF LQSRTYVLVF DDVWTIQAWE AIRHALPDVN
301: NGSRVILTTR LLDVASFCSI ETNGYVYEVK PLSTEESWIL FCQKAFHGYS CPSHLESISR NILKKCGGLP LAVVAVGGVL ATKNRNNIRE WGMLNHSLGP
401: ELDSNDKFES MRIVLLLSFN DLPYYLKPCF LYLSIYPEDH LIERNTLIYR WITEGFVKQK VRRTVEDVAD SYLNELINRS LIHPVQYNDD GSMKLGRIHD
501: LYRELILSKS RDDNFTATVD EHNKLWPEKT RWLSMHGMLG NLQVKRSVTK LRSLLTFGVA DPQSLSCISQ VLGSSRMLRV LDLRGAPLNM IPETVFQLFH
601: LRYLSLRNTN VKVLPRSIGR LKQLEILDLK QTYVTELPVE ILKLENLRHL LVYSHVSYSY LPYNCSPGFK AFRGIGALRA LQKLVYIEAT PGSGILKEVG
701: MLGELRRLCI LKLRKEDGWT VCSSIQKLHK LESLNLKSVE EHEILDLSYL SSPPPLLQRL YLTGHIVMLP AWIQDLNSLV KIYFRWTHLT EDPLKYLQDL
801: PNLVHLEFLV GYTGKELYFE QGKFQRLKLL NLDKLEGLRQ VTIGEGAVPH LEKLVIQRCA LLETVPTGIE YLLNLKVLEF FDMPDEFIMT LRPEKLGADA
901: WKVSHIPEVF YTYWRDGCWM VHSLKEKEKN QISDQSGAVT RTYGRRNSL
001: MASATVDFGI GRILSVLENE TLLLSGVHGE IDKMKKELLI MKSFLEDTHK HGGNGSTTTT TQLFQTFVAN TRDLAYQIED ILDEFGYHIH GYRSCAKIWR
101: AFHFPRYMWA RHSIAQKLGM VNVMIQSISD SMKRYYHSEN YQAALLPPID DGDAKWVNNI SESSLFFSEN SLVGIDAPKG KLIGRLLSPE PQRIVVAVVG
201: MGGSGKTTLS ANIFKSQSVR RHFESYAWVT ISKSYVIEDV FRTMIKEFYK EADTQIPAEL YSLGYRELVE KLVEYLQSKR YIVVLDDVWT TGLWREISIA
301: LPDGIYGSRV MMTTRDMNVA SFPYGIGSTK HEIELLKEDE AWVLFSNKAF PASLEQCRTQ NLEPIARKLV ERCQGLPLAI ASLGSMMSTK KFESEWKKVY
401: STLNWELNNN HELKIVRSIM FLSFNDLPYP LKRCFLYCSL FPVNYRMKRK RLIRMWMAQR FVEPIRGVKA EEVADSYLNE LVYRNMLQVI LWNPFGRPKA
501: FKMHDVIWEI ALSVSKLERF CDVYNDDSDG DDAAETMENY GSRHLCIQKE MTPDSIRATN LHSLLVCSSA KHKMELLPSL NLLRALDLED SSISKLPDCL
601: VTMFNLKYLN LSKTQVKELP KNFHKLVNLE TLNTKHSKIE ELPLGMWKLK KLRYLITFRR NEGHDSNWNY VLGTRVVPKI WQLKDLQVMD CFNAEDELIK
701: NLGCMTQLTR ISLVMVRREH GRDLCDSLNK IKRIRFLSLT SIDEEEPLEI DDLIATASIE KLFLAGKLER VPSWFNTLQN LTYLGLRGSQ LQENAILSIQ
801: TLPRLVWLSF YNAYMGPRLR FAQGFQNLKI LEIVQMKHLT EVVIEDGAMF ELQKLYVRAC RGLEYVPRGI ENLINLQELH LIHVSNQLVE RIRGEGSVDR
901: SRVKHIPAIK HYFRTDNGSF YVSLSS
101: AFHFPRYMWA RHSIAQKLGM VNVMIQSISD SMKRYYHSEN YQAALLPPID DGDAKWVNNI SESSLFFSEN SLVGIDAPKG KLIGRLLSPE PQRIVVAVVG
201: MGGSGKTTLS ANIFKSQSVR RHFESYAWVT ISKSYVIEDV FRTMIKEFYK EADTQIPAEL YSLGYRELVE KLVEYLQSKR YIVVLDDVWT TGLWREISIA
301: LPDGIYGSRV MMTTRDMNVA SFPYGIGSTK HEIELLKEDE AWVLFSNKAF PASLEQCRTQ NLEPIARKLV ERCQGLPLAI ASLGSMMSTK KFESEWKKVY
401: STLNWELNNN HELKIVRSIM FLSFNDLPYP LKRCFLYCSL FPVNYRMKRK RLIRMWMAQR FVEPIRGVKA EEVADSYLNE LVYRNMLQVI LWNPFGRPKA
501: FKMHDVIWEI ALSVSKLERF CDVYNDDSDG DDAAETMENY GSRHLCIQKE MTPDSIRATN LHSLLVCSSA KHKMELLPSL NLLRALDLED SSISKLPDCL
601: VTMFNLKYLN LSKTQVKELP KNFHKLVNLE TLNTKHSKIE ELPLGMWKLK KLRYLITFRR NEGHDSNWNY VLGTRVVPKI WQLKDLQVMD CFNAEDELIK
701: NLGCMTQLTR ISLVMVRREH GRDLCDSLNK IKRIRFLSLT SIDEEEPLEI DDLIATASIE KLFLAGKLER VPSWFNTLQN LTYLGLRGSQ LQENAILSIQ
801: TLPRLVWLSF YNAYMGPRLR FAQGFQNLKI LEIVQMKHLT EVVIEDGAMF ELQKLYVRAC RGLEYVPRGI ENLINLQELH LIHVSNQLVE RIRGEGSVDR
901: SRVKHIPAIK HYFRTDNGSF YVSLSS
Arabidopsis Description
RPM1Disease resistance protein RPM1 [Source:UniProtKB/Swiss-Prot;Acc:Q39214]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.