Factsheet for VIT_02s0012g02720.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
extracellular 3
cytosol 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0020g04930.t01	Wine grape	cytosol	31.79	55.12
PGSC0003DMT400065023	Potato	cytosol, endoplasmic reticulum	51.66	50.68
Solyc01g086810.2.1	Tomato	nucleus	52.09	50.52
PGSC0003DMT400016161	Potato	cytosol	32.76	48.8
VIT_06s0009g01350.t01	Wine grape	cytosol	30.72	45.54
GSMUA_Achr8P25780_001	Banana	cytosol	44.15	44.92
VIT_07s0005g06240.t01	Wine grape	cytosol	23.85	44.22
VIT_07s0005g06210.t01	Wine grape	cytosol	43.82	43.68
VIT_07s0005g06180.t01	Wine grape	cytosol	41.35	41.89
VIT_07s0005g06220.t01	Wine grape	cytosol	41.25	41.56
VIT_01s0011g00960.t01	Wine grape	nucleus	36.73	39.27
VIT_01s0011g00950.t01	Wine grape	cytosol, nucleus, peroxisome	37.38	38.88
VIT_01s0011g00970.t01	Wine grape	cytosol	35.77	38.81
Solyc11g010160.1.1	Tomato	cytosol	37.7	38.7
PGSC0003DMT400094852	Potato	cytosol	37.59	38.63
VIT_01s0011g01020.t01	Wine grape	cytosol	36.95	38.18
VIT_01s0011g00990.t01	Wine grape	cytosol	32.44	38.04
VIT_07s0005g06200.t01	Wine grape	cytosol, plasma membrane	36.52	37.99
Os08t0424700-00	Rice	cytosol	35.12	36.05
VIT_00s0515g00020.t01	Wine grape	cytosol	32.22	35.38
VIT_06s0009g01360.t01	Wine grape	cytosol	37.27	32.19
VIT_01s0011g01000.t01	Wine grape	nucleus	37.38	22.08

Protein Annotations

Gene3D:1.10.10.10	EntrezGene:100854691	wikigene:100854691	Gene3D:3.40.50.300	Gene3D:3.80.10.10	MapMan:35.1
ProteinID:AAM21277	ProteinID:AAM21277.1	EMBL:AF369819	EMBL:AM456112	ProteinID:CAN74463	ProteinID:CAN74463.1
ProteinID:CCB57823	ProteinID:CCB57823.1	UniProt:F6HT13	EMBL:FN596247	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006950	GO:GO:0006952
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0043531
InterPro:IPR032675	InterPro:IPR036388	EntrezGene:LOC100854691	wikigene:LOC100854691	InterPro:LRR_dom_sf	InterPro:NB-ARC
InterPro:P-loop_NTPase	PFAM:PF00931	PRINTS:PR00364	PANTHER:PTHR43886	PANTHER:PTHR43886:SF30	InterPro:RX-like_CC
SUPFAM:SSF52058	SUPFAM:SSF52540	UniParc:UPI00021096BE	ArrayExpress:VIT_02s0012g02720	EnsemblPlantsGene:VIT_02s0012g02720	EnsemblPlants:VIT_02s0012g02720.t01
InterPro:WH-like_DNA-bd_sf	RefSeq:XP_003631469	RefSeq:XP_003631469.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr2:-:10508820..10511615

Molecular Weight (calculated)

107072.0 Da

IEP (calculated)

7.720

GRAVY (calculated)

-0.228

Length

931 amino acids

Sequence
(BLAST)

001: MAESVVTFLL NKLATLPQLE QLKLLRGVWG DVEYIRDELE RMKAFLRVAD AMEESDEELK VWVRQVSDVA YDTEDVLDEF SHHLAVHPQQ EWFCCWLDMI
101: SFCTPSNWTN RLRIAYKMQG IKSRVINISE GHRRYRYRSD VARQECSSSI TTAATNIHAR NIERRGDALL LDEAELVGIN QHKSLLIECL VKGGCGAGLK
201: VVSVVGMGGL GKTTLVKKVY DDIEVRKHFE SHMWITVSQS FKTEELLKDM IRQLYDGIRQ PVPNSVDMGS SQMLKASIKD FLQQRRYLLI LDDVWDLHAW
301: EALKYTLPNC NCDGRVLLTT RNVDTASTAC KESHGNVYTL KPLSQEESWT LFCKKTFPAE SCPSYLEGIS KCILQRCEGL PLAIVAVSGV LSTKDGIDEW
401: ESVYRSLGAE LEGNNKFDSL KEILLLSYND LPYYLKSCFL YMSIFPEDYL IRRMRLIRLW MAEGFVEAKG RKTQEEVGEG YLNELVNRSL VQVATRTRNG
501: RVSTCRVHDL LREIIVSKSR GGQNLVAIAN EENVRWPEKI RRLAVHKTLE NVPQDMELGQ LRSLLMFSLP SGDCIPTLSS GGLRLLKVLD LQGAPLEIIP
601: NEVWNLFNLR YLSLSRTKVK VIPSSIGKLQ NLETLDLKHS YVTELPAEIL MLHQLRHLLL YRYEKQTSSP FHSTYGFKAP QGMQALSFLQ KLCFVDVEEG
701: NGVISEVGHL KQLRKLGIIK LRKEDGMNLC SSIEKLSNLR SLDVTSIQDD EMIDLQCMSS PPRFLQRLWL QGRLEKMPHW ISSLDNLVKL RLRWSRLRDD
801: PLVLLQALPS LVELQLRHAY EGESLCFKSA GFLRLNILHF HKLERLRRVT VEDGAMPRLE RLGIFYCKLL EKVPQGIQFL TQLKSLDLAE MPNEFIGKLQ
901: DRSGEDYSVI EHIPDVRYTY WVNNQWKQYR L

Best Arabidopsis Sequence Match ( AT3G07040.1 )
(BLAST)

001: MASATVDFGI GRILSVLENE TLLLSGVHGE IDKMKKELLI MKSFLEDTHK HGGNGSTTTT TQLFQTFVAN TRDLAYQIED ILDEFGYHIH GYRSCAKIWR
101: AFHFPRYMWA RHSIAQKLGM VNVMIQSISD SMKRYYHSEN YQAALLPPID DGDAKWVNNI SESSLFFSEN SLVGIDAPKG KLIGRLLSPE PQRIVVAVVG
201: MGGSGKTTLS ANIFKSQSVR RHFESYAWVT ISKSYVIEDV FRTMIKEFYK EADTQIPAEL YSLGYRELVE KLVEYLQSKR YIVVLDDVWT TGLWREISIA
301: LPDGIYGSRV MMTTRDMNVA SFPYGIGSTK HEIELLKEDE AWVLFSNKAF PASLEQCRTQ NLEPIARKLV ERCQGLPLAI ASLGSMMSTK KFESEWKKVY
401: STLNWELNNN HELKIVRSIM FLSFNDLPYP LKRCFLYCSL FPVNYRMKRK RLIRMWMAQR FVEPIRGVKA EEVADSYLNE LVYRNMLQVI LWNPFGRPKA
501: FKMHDVIWEI ALSVSKLERF CDVYNDDSDG DDAAETMENY GSRHLCIQKE MTPDSIRATN LHSLLVCSSA KHKMELLPSL NLLRALDLED SSISKLPDCL
601: VTMFNLKYLN LSKTQVKELP KNFHKLVNLE TLNTKHSKIE ELPLGMWKLK KLRYLITFRR NEGHDSNWNY VLGTRVVPKI WQLKDLQVMD CFNAEDELIK
701: NLGCMTQLTR ISLVMVRREH GRDLCDSLNK IKRIRFLSLT SIDEEEPLEI DDLIATASIE KLFLAGKLER VPSWFNTLQN LTYLGLRGSQ LQENAILSIQ
801: TLPRLVWLSF YNAYMGPRLR FAQGFQNLKI LEIVQMKHLT EVVIEDGAMF ELQKLYVRAC RGLEYVPRGI ENLINLQELH LIHVSNQLVE RIRGEGSVDR
901: SRVKHIPAIK HYFRTDNGSF YVSLSS

Arabidopsis Description

RPM1Disease resistance protein RPM1 [Source:UniProtKB/Swiss-Prot;Acc:Q39214]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.