Factsheet for VIT_07s0005g06180.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0005g06220.t01	Wine grape	cytosol	85.64	85.17
VIT_07s0005g06210.t01	Wine grape	cytosol	72.8	71.63
VIT_07s0005g06240.t01	Wine grape	cytosol	38.96	71.31
VIT_07s0005g06200.t01	Wine grape	cytosol, plasma membrane	66.59	68.38
VIT_06s0009g01350.t01	Wine grape	cytosol	42.22	61.78
KRH56221	Soybean	cytosol	44.94	46.04
KRH56223	Soybean	cytosol	46.57	45.39
KRH56222	Soybean	cytosol	46.14	44.92
KRG89708	Soybean	cytosol	44.61	43.99
VIT_06s0009g01360.t01	Wine grape	cytosol	51.58	43.97
KRH56303	Soybean	cytosol	36.13	42.89
KRH45994	Soybean	cytosol	44.07	42.81
KRG89705	Soybean	cytosol	43.09	42.76
VIT_05s0020g04930.t01	Wine grape	cytosol	24.92	42.64
KRG98590	Soybean	cytosol	33.19	42.48
KRG98889	Soybean	cytosol	37.21	42.01
KRG98599	Soybean	cytosol	22.52	41.99
KRH11715	Soybean	cytosol, endoplasmic reticulum, plasma membrane	32.54	41.64
KRG98656	Soybean	cytosol	20.46	41.59
KRG98610	Soybean	cytosol	26.99	41.47
VIT_02s0012g02720.t01	Wine grape	cytosol, extracellular	41.89	41.35
KRG98584	Soybean	cytosol	32.21	41.23
KRG98641	Soybean	cytosol	36.45	40.95
KRG98651	Soybean	cytosol	35.47	40.85
KRG98586	Soybean	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	40.7	40.48
KRG98644	Soybean	endoplasmic reticulum	12.62	40.42
KRG98654	Soybean	peroxisome	40.04	40.31
KRG98595	Soybean	cytosol	40.15	40.11
KRG98649	Soybean	cytosol	39.5	40.07
KRG98585	Soybean	cytosol	40.04	40.04
KRG98645	Soybean	cytosol	28.62	40.03
KRH46220	Soybean	cytosol	39.28	39.98
KRG98583	Soybean	nucleus	39.93	39.93
KRG98602	Soybean	cytosol	39.93	39.89
KRG98637	Soybean	cytosol	39.93	39.85
KRH62703	Soybean	cytosol	28.18	39.78
KRG98640	Soybean	cytosol	37.54	39.75
KRG98648	Soybean	cytosol	38.63	39.58
VIT_01s0011g00960.t01	Wine grape	nucleus	37.32	39.38
KRH46266	Soybean	cytosol	38.74	39.29
KRH46198	Soybean	cytosol	36.89	39.24
KRH00079	Soybean	nucleus	38.41	39.14
KRG98600	Soybean	cytosol, peroxisome	24.16	39.02
VIT_01s0011g00950.t01	Wine grape	cytosol, nucleus, peroxisome	37.87	38.88
KRH46192	Soybean	cytosol	38.19	38.87
KRG98719	Soybean	cytosol	38.08	38.76
KRG98721	Soybean	cytosol	38.3	38.6
VIT_01s0011g00970.t01	Wine grape	cytosol	36.02	38.58
KRG98720	Soybean	cytosol, plasma membrane	38.08	38.55
KRH46576	Soybean	cytosol	27.09	38.43
VIT_01s0011g01020.t01	Wine grape	cytosol	37.54	38.29
KRH76365	Soybean	cytosol	28.94	38.0
KRG98659	Soybean	cytosol	15.56	37.83
VIT_01s0011g00990.t01	Wine grape	cytosol	32.64	37.78
KRG98632	Soybean	cytosol	30.47	36.51
KRG98635	Soybean	cytosol	14.47	35.85
Os04t0219600-01	Rice	cytosol	26.66	34.95
VIT_00s0515g00020.t01	Wine grape	cytosol	31.66	34.32
KRG98604	Soybean	cytosol	11.1	33.01
KRG98589	Soybean	mitochondrion	6.09	32.0
KRG98700	Soybean	cytosol	6.75	29.25
VIT_01s0011g01000.t01	Wine grape	nucleus	38.52	22.46
Os04t0219550-00	Rice	cytosol	1.74	21.33

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.8.430	EntrezGene:100251642	wikigene:100251642	Gene3D:3.40.50.300	Gene3D:3.80.10.10
MapMan:35.1	ProteinID:CCB60266	ProteinID:CCB60266.1	UniProt:F6I000	EMBL:FN596502	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006950
GO:GO:0006952	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020
GO:GO:0043531	InterPro:IPR032675	InterPro:IPR036388	EntrezGene:LOC100251642	wikigene:LOC100251642	InterPro:LRR_dom_sf
InterPro:NB-ARC	InterPro:P-loop_NTPase	PFAM:PF00931	PRINTS:PR00364	PANTHER:PTHR43886	PANTHER:PTHR43886:SF14
InterPro:RX-like_CC	SUPFAM:SSF52058	SUPFAM:SSF52540	UniParc:UPI0001985BDD	ArrayExpress:VIT_07s0005g06180	EnsemblPlantsGene:VIT_07s0005g06180
EnsemblPlants:VIT_07s0005g06180.t01	InterPro:WH-like_DNA-bd_sf	RefSeq:XP_002265419	RefSeq:XP_002265419.1	SEG:seg	:

Description

No Description!

Coordinates

chr7:-:11038146..11040905

Molecular Weight (calculated)

104274.0 Da

IEP (calculated)

8.063

GRAVY (calculated)

-0.136

Length

919 amino acids

Sequence
(BLAST)

001: MAEIAVNIAI DKLLPLLNQE ARLLGGVQTQ VEDIKTELLY IQAFLMDADA KGEKADVSQG LKTWIQDLRE TAYSIEDLID EYLLHLGNPS RRHRFIGFRC
101: KVGRLIKKLK RRHEIASKIR DIQKKVVKLK ETSSTYGFIS SVQPGSGGSS ISAPWHDPRV TSLFIDEAEI VGIESQKIEL TSRLVEGTPE RTVISVVGMG
201: GLGKTTLANK VYDNKELVGH FDCSAWITVS QSFKMEELLR NMSMKFYQAR KEPVPEGINT MDESSLMTLT RQYLQDKRYV VVFDDVWKLD FWGFIKYVLP
301: ENKKGSRIII TTRNDEVASC CKESSFDYIH KLQPLPPKSS WKLFCKKAFQ GGCPPELEKL SHDIVRRCGG LPLAIVAIGG LLSRKEKLVS EWKKFSDTLG
401: SELQSNSHLE SINTILSLSY HDLPYQLKSC FLYFAIFPED CTIKCRPLTR LWIAEGFVKA KRGVTLEEVA EEFLTELIQR SLVLVSEVFA DGKIRSCHVH
501: DLMREIILTK AEELSFCCVM TGEESSFDGR FRRLSLHYSS NNVVNITGKK SHIRSIFLYN SQTFFLGILA SKFNLLEVLH LDDSGLDSIP ENLGNLLHLR
601: YLSLRNTKVR MLPRSIGKLQ NLQTLDLKYT LVEDLPVEIN RLKKLRNILV QNYDFDVDLG LFSFKGVHVK EGIGCLEELQ KLSCVEANHG AGVIKELGKL
701: RQLRKLEIIK LTRENGEHLC ASITNMNRLE SLLISSLSED ETLDLQYISH PPSCLSRLQL FGPLEKLPHW ISELQNLSIV TLYGSNLMND PVQVLQALPS
801: LQELALVRDS VVEQLCFETS GFQKLKLLFL RFLVGLKRVK IENGALPQLK TLRVGPCPQL EEIPPGIRHL TRLTTLGFDN LQEELKVSMI PTRGRNYEIV
901: EHIPNVLFHG IETQPTRAS

Best Arabidopsis Sequence Match ( AT3G07040.1 )
(BLAST)

001: MASATVDFGI GRILSVLENE TLLLSGVHGE IDKMKKELLI MKSFLEDTHK HGGNGSTTTT TQLFQTFVAN TRDLAYQIED ILDEFGYHIH GYRSCAKIWR
101: AFHFPRYMWA RHSIAQKLGM VNVMIQSISD SMKRYYHSEN YQAALLPPID DGDAKWVNNI SESSLFFSEN SLVGIDAPKG KLIGRLLSPE PQRIVVAVVG
201: MGGSGKTTLS ANIFKSQSVR RHFESYAWVT ISKSYVIEDV FRTMIKEFYK EADTQIPAEL YSLGYRELVE KLVEYLQSKR YIVVLDDVWT TGLWREISIA
301: LPDGIYGSRV MMTTRDMNVA SFPYGIGSTK HEIELLKEDE AWVLFSNKAF PASLEQCRTQ NLEPIARKLV ERCQGLPLAI ASLGSMMSTK KFESEWKKVY
401: STLNWELNNN HELKIVRSIM FLSFNDLPYP LKRCFLYCSL FPVNYRMKRK RLIRMWMAQR FVEPIRGVKA EEVADSYLNE LVYRNMLQVI LWNPFGRPKA
501: FKMHDVIWEI ALSVSKLERF CDVYNDDSDG DDAAETMENY GSRHLCIQKE MTPDSIRATN LHSLLVCSSA KHKMELLPSL NLLRALDLED SSISKLPDCL
601: VTMFNLKYLN LSKTQVKELP KNFHKLVNLE TLNTKHSKIE ELPLGMWKLK KLRYLITFRR NEGHDSNWNY VLGTRVVPKI WQLKDLQVMD CFNAEDELIK
701: NLGCMTQLTR ISLVMVRREH GRDLCDSLNK IKRIRFLSLT SIDEEEPLEI DDLIATASIE KLFLAGKLER VPSWFNTLQN LTYLGLRGSQ LQENAILSIQ
801: TLPRLVWLSF YNAYMGPRLR FAQGFQNLKI LEIVQMKHLT EVVIEDGAMF ELQKLYVRAC RGLEYVPRGI ENLINLQELH LIHVSNQLVE RIRGEGSVDR
901: SRVKHIPAIK HYFRTDNGSF YVSLSS

Arabidopsis Description

RPM1Disease resistance protein RPM1 [Source:UniProtKB/Swiss-Prot;Acc:Q39214]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.