Factsheet for VIT_05s0020g04930.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016161	Potato	cytosol	51.02	43.84
VIT_07s0005g06240.t01	Wine grape	cytosol	33.89	36.26
VIT_02s0012g02720.t01	Wine grape	cytosol, extracellular	55.12	31.79
VIT_06s0009g01350.t01	Wine grape	cytosol	37.06	31.69
KRH74294	Soybean	cytosol	52.89	30.02
KRH74292	Soybean	cytosol	51.77	29.76
KRH39626	Soybean	cytosol	52.51	29.75
KRH39629	Soybean	cytosol	51.77	29.67
PGSC0003DMT400065023	Potato	cytosol, endoplasmic reticulum	51.21	28.98
VIT_01s0011g00990.t01	Wine grape	cytosol	42.64	28.84
Solyc01g086810.2.1	Tomato	nucleus	50.09	28.02
VIT_01s0011g00960.t01	Wine grape	nucleus	44.51	27.44
VIT_01s0011g00970.t01	Wine grape	cytosol	43.39	27.16
VIT_01s0011g00950.t01	Wine grape	cytosol, nucleus, peroxisome	44.69	26.82
VIT_07s0005g06210.t01	Wine grape	cytosol	46.0	26.45
GSMUA_Achr8P25780_001	Banana	cytosol	44.32	26.01
VIT_07s0005g06220.t01	Wine grape	cytosol	44.69	25.97
VIT_01s0011g01020.t01	Wine grape	cytosol	42.64	25.42
VIT_07s0005g06180.t01	Wine grape	cytosol	42.64	24.92
PGSC0003DMT400094852	Potato	cytosol	41.9	24.83
Solyc11g010160.1.1	Tomato	cytosol	41.15	24.37
Os08t0424700-00	Rice	cytosol	39.48	23.37
VIT_07s0005g06200.t01	Wine grape	cytosol, plasma membrane	36.31	21.79
VIT_06s0009g01360.t01	Wine grape	cytosol	43.2	21.52
VIT_00s0515g00020.t01	Wine grape	cytosol	29.98	18.99
VIT_01s0011g01000.t01	Wine grape	nucleus	43.58	14.85

Protein Annotations

Gene3D:1.10.10.10	Gene3D:3.80.10.10	MapMan:35.1	ProteinID:CCB50509	ProteinID:CCB50509.1	UniProt:F6HDZ4
EMBL:FN595749	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006950	GO:GO:0006952	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0043531	InterPro:IPR032675	InterPro:IPR036388	InterPro:LRR_dom_sf
InterPro:NB-ARC	PFAM:PF00931	PANTHER:PTHR43886	PANTHER:PTHR43886:SF30	SUPFAM:SSF52058	UniParc:UPI00019833EE
ArrayExpress:VIT_05s0020g04930	EnsemblPlantsGene:VIT_05s0020g04930	EnsemblPlants:VIT_05s0020g04930.t01	InterPro:WH-like_DNA-bd_sf	SEG:seg	:

Description

No Description!

Coordinates

chr5:-:6784989..6786602

Molecular Weight (calculated)

62048.9 Da

IEP (calculated)

8.676

GRAVY (calculated)

-0.197

Length

537 amino acids

Sequence
(BLAST)

001: MDEWDIVDRS LSSELESNDK LERVNKILSL GYNDLPYYLK HCFLYLSIFP EDHLIEHKRL IRLWIAEGFV VPQEGKMPEE VAESYLRDLT NRCLIQVAQR
101: DVDGRIKTYR IHDLIRQIII SKSRDQDFVT IIRENNTATP NKARHLSARG TLETCTRQEF PGVRSLLIFG VDSVSKSCMS ALFSGDRFGL LRVLDLRGLP
201: LEKFPEGVVN LFHLRYLSLR GTKVDILPSS IGKLPYLETL DLKQTKVSKL PAEIQKLQNL RHLLLYRCVI VSYVTFHSKE GFLMPERIGD LQFLQKLCFV
301: EPEQGGHTLT ELGKLSQLRK LGIIKLRKED GRSLCSSIEK MKNLGSLDVT SLKEEEIIDL NHLSSPPLLL KGLYLKGRLE DLPGWIPTLD NLSKISLRWS
401: RLKNNPLEAL QALPNLVQLQ LLHAYEGEAL CFKAGGFQKL KSLKLDRLEE LRKVSVEWGA LTCLQELSIL RCQALKQLPF GIQYLSQLQQ LCFYDMPDEF
501: ARTLLRAEQG YDYWKIKHIP KVFFIYSENG RWSFYHL

Best Arabidopsis Sequence Match ( AT1G53350.1 )
(BLAST)

001: MAEAVVSFGV EKLWELLSRE SARLNGIDEQ VDGLKRQLGR LQSLLKDADA KKNETERVRN FLEDVKDIVY DADDIIESFL LNELRGKEKG IKKQVRTLAC
101: FLVDRRKFAS DIEGITKRIS EVIVGMQSLG IQHIADGGGR SLSLQERQRE IRQTFSRNSE SDLVGLDQSV EELVDHLVEN DSVQVVSVSG MGGIGKTTLA
201: RQVFHHDIVR RHFDGFSWVC VSQQFTRKDV WQRILQDLRP YDEGIIQMDE YTLQGELFEL LESGRYLLVL DDVWKEEDWD RIKAVFPHKR GWKMLLTSRN
301: EGLGLHADPT CFAFRPRILT PEQSWKLFER IVSSRRDKTE FKVDEAMGKE MVTYCGGLPL AVKVLGGLLA KKHTVLEWKR VHSNIVTHIV GKSGLSDDNS
401: NSVYRVLSLS YEDLPMQLKH CFFYLAHFPE DYKIDVKILF NYWVAEGIIT PFHDGSTIQD TGESYLEELV RRNMVVVEES YLTSRIEYCQ MHDMMREVCL
501: SKAKEENFIR VVKVPTTTST TINAQSPCRS RRLVLHSGNA LHMLGHKDNK KARSVLIFGV EEKFWKPRGF QCLPLLRVLD LSYVQFEGGK LPSSIGDLIH
601: LRFLSLYEAG VSHLPSSLGN LKLLLCLNLG VADRLLVHVP NVLKEMQELR YLRLPRSMPA KTKLELGDLV NLESLTNFST KHGSVTDLLR MTKLSVLNVI
701: FSGECTFETL LLSLRELRNL ETLSFHDFQK VSVANHGGEL LVLDFIHLKD LTLSMHLPRF PDQYRFPPHL AHIWLIGCRM EEDPMPILEK LLHLKSVYLS
801: SGAFLGRRMV CSKGGFPQLL ALKMSYKKEL VEWRVEEGSM PCLRTLTIDN CKKLKQLPDG LKYVTCLKEL KIERMKREWT ERLVIGGEDY YKVQHIPSVQ
901: FINCDH

Arabidopsis Description

RPP8L2Probable disease resistance RPP8-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:P0C8S1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.