Factsheet for VIT_00s0515g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054356	Potato	extracellular	60.14	55.86
VIT_07s0005g06240.t01	Wine grape	cytosol	19.81	33.47
VIT_06s0009g01350.t01	Wine grape	cytosol	24.76	33.44
VIT_07s0005g06210.t01	Wine grape	cytosol	35.5	32.23
VIT_02s0012g02720.t01	Wine grape	cytosol, extracellular	35.38	32.22
VIT_07s0005g06180.t01	Wine grape	cytosol	34.32	31.66
VIT_07s0005g06220.t01	Wine grape	cytosol	34.08	31.28
VIT_01s0011g00990.t01	Wine grape	cytosol	28.89	30.86
VIT_01s0011g00960.t01	Wine grape	nucleus	31.6	30.77
VIT_07s0005g06200.t01	Wine grape	cytosol, plasma membrane	31.96	30.28
VIT_01s0011g00950.t01	Wine grape	cytosol, nucleus, peroxisome	31.72	30.06
VIT_05s0020g04930.t01	Wine grape	cytosol	18.99	29.98
VIT_01s0011g00970.t01	Wine grape	cytosol	30.19	29.84
VIT_01s0011g01020.t01	Wine grape	cytosol	30.9	29.08
VIT_06s0009g01360.t01	Wine grape	cytosol	29.6	23.28
VIT_01s0011g01000.t01	Wine grape	nucleus	32.55	17.51

Protein Annotations

Gene3D:1.10.8.430	EntrezGene:100255919	wikigene:100255919	Gene3D:3.40.50.300	Gene3D:3.80.10.10	MapMan:35.1
ProteinID:CCB57418	ProteinID:CCB57418.1	UniProt:F6HRW0	EMBL:FN596046	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006950	GO:GO:0006952
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0043531
InterPro:IPR032675	EntrezGene:LOC100255919	wikigene:LOC100255919	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt_typical-subtyp	InterPro:NB-ARC
InterPro:P-loop_NTPase	PFAM:PF00931	PRINTS:PR00364	PANTHER:PTHR43886	PANTHER:PTHR43886:SF17	InterPro:RX-like_CC
SMART:SM00369	SUPFAM:SSF52058	SUPFAM:SSF52540	UniParc:UPI000210859F	ArrayExpress:VIT_00s0515g00020	EnsemblPlantsGene:VIT_00s0515g00020
EnsemblPlants:VIT_00s0515g00020.t01	RefSeq:XP_002264069	RefSeq:XP_002264069.2	SEG:seg	:	:

Description

No Description!

Coordinates

chrUn:-:31016731..31020673

Molecular Weight (calculated)

98461.5 Da

IEP (calculated)

8.982

GRAVY (calculated)

-0.259

Length

848 amino acids

Sequence
(BLAST)

001: MAEELILFFL RKLSEQLNEE GELLSGVHED IEWIKNELQA MVAFLRDVHR TQQRDKRVGR WAEEVRKLVY DAEDIIDEFL IRMENPRWNF IKHLQTRHQV
101: GSQIQKVKKR VMEVKERRDR YNWLHIAQEN TPGIMRASST GFGAATPFFQ VDDIVGIEVH VEQLVELLIE GKSDRRQVIS VFGMGGLGKT TLAKEVYKRV
201: KTDFDCYSWV FLSQSCNLRD VLQRILFGLK ESKNEPAMEV MDVMNEGLLQ EMIYNYLQDK MYLIVFDDVW DTEIWEELKH ALPRERGQII LTTRIQDIAS
301: SVEDGCYIYH LHPLTHELAW KLFCKKAFRR MKACPEDLRG LAESIVNRCG GLPLAIVAIA GLLSSKGTNA RDWQHVLDTL DWELNHDRDL DRLHKTLLLS
401: YNHLPFYLKY CFLHIGLFPA DYEIGRKRLI RMWVAEGFVE KSRSKTDEEV ANHYFLKLIR GSMIQPITLP ARDVVKACRV HDQMRDVAAY MLKQEMFGAA
501: LEAGDKEMEG RPRRLSIYDN AKNLPSNMGN LKLRSFLMFK ITELSSSNLL KIFEELKLVR VLDLQGVPIE RLPGEVGSLI HLRYLNLRGT FIKCLPKQLK
601: SLRNLQTLDI RNTNLTSLPT GINRLQQLRH LHIASFCDRE KGFLKMPKGK KWLKNLQTLS GVEPDEDLLK ELRSLTNLRK LYIGGMNKTN SEELWVSLGE
701: MKSLRSFTMV ADSSPERPQV ESLSRPPPSL EKLKLQVSMT RLPKWFVSLR YLHTLYLLKN FLVEDPFPIL QQLPNLFVLI LASSAFLSTE ICCRSGGFPK
801: LTLLRILGME NWRRWMPIEE GTMPNLRVSI FYFALRLDVP TEGSGKHP

Best Arabidopsis Sequence Match ( AT5G48620.1 )
(BLAST)

001: MAEGFVSFGL EKLWDLLSRE SERLQGIDEQ LDGLKRQLRS LQSLLKDADA KKHGSDRVRN FLEDVKDLVF DAEDIIESYV LNKLRGEGKG VKKHVRRLAR
101: FLTDRHKVAS DIEGITKRIS DVIGEMQSFG IQQIIDGVRS LSLQERQRVQ REIRQTYPDS SESDLVGVEQ SVEELVGHLV ENDIYQVVSI AGMGGIGKTT
201: LARQVFHHDL VRRHFDGFAW VCVSQQFTLK HVWQRILQEL QPHDGNILQM DESALQPKLF QLLETGRYLL VLDDVWKKED WDRIKAVFPR KRGWKMLLTS
301: RNEGVGIHAD PTCLTFRASI LNPEESWKLC ERIVFPRRDE TEVRLDEEME AMGKEMVTHC GGLPLAVKAL GGLLANKHTV PEWKRVSDNI GSQIVGGSCL
401: DDNSLNSVNR ILSLSYEDLP THLKHRFLYL AHFPEDSKIY TQDLFNYWAA EGIYDGSTIQ DSGEYYLEEL VRRNLVIADN RYLSLEFNFC QMHDMMREVC
501: LSKAKEENFL QIIKDPTSTS TINAQSPSRS RRFSIHSGKA FHILGHRNNP KVRSLIVSRF EEDFWIRSAS VFHNLTLLRV LDLSRVKFEG GKLPSSIGGL
601: IHLRYLSLYG AVVSHLPSTM RNLKLLLFLN LRVDNKEPIH VPNVLKEMLE LRYLSLPQEM DDKTKLELGD LVNLEYLWYF STQHSSVTDL LRMTKLRNLG
701: VSLSERCNFE TLSSSLRELR NLEMLNVLFS PEIVMVDHMG EFVLDHFIHL KQLGLAVRMS KIPDQHQFPP HLAHIHLVHC VMKEDPMPIL EKLLHLKSVA
801: LSYGAFIGRR VVCSKGGFPQ LCALGISGES ELEEWIVEEG SMPCLRTLTI HDCEKLKELP DGLKYITSLK ELKIREMKRE WKEKLVPGGE DYYKVQHIPD
901: VQFINCDL

Arabidopsis Description

RPP8L4Probable disease resistance RPP8-like protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJK8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.