Factsheet for VIT_01s0011g00950.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	peroxisome
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0011g00960.t01	Wine grape	nucleus	89.27	91.73
VIT_01s0011g00970.t01	Wine grape	cytosol	73.3	76.46
VIT_01s0011g01020.t01	Wine grape	cytosol	74.41	73.92
VIT_01s0011g00990.t01	Wine grape	cytosol	65.14	73.43
VIT_05s0020g04930.t01	Wine grape	cytosol	26.82	44.69
VIT_01s0011g01000.t01	Wine grape	nucleus	73.97	42.01
VIT_07s0005g06240.t01	Wine grape	cytosol	22.57	40.24
GSMUA_Achr8P25780_001	Banana	cytosol	39.89	39.02
VIT_07s0005g06180.t01	Wine grape	cytosol	38.88	37.87
VIT_02s0012g02720.t01	Wine grape	cytosol, extracellular	38.88	37.38
VIT_06s0009g01350.t01	Wine grape	cytosol	26.15	37.26
VIT_07s0005g06210.t01	Wine grape	cytosol	38.1	36.51
VIT_07s0005g06220.t01	Wine grape	cytosol	37.43	36.26
Os08t0424700-00	Rice	cytosol	35.2	34.73
VIT_07s0005g06200.t01	Wine grape	cytosol, plasma membrane	34.3	34.3
VIT_00s0515g00020.t01	Wine grape	cytosol	30.06	31.72
VIT_06s0009g01360.t01	Wine grape	cytosol	32.18	26.72

Protein Annotations

EntrezGene:100257664	wikigene:100257664	Gene3D:3.40.50.300	Gene3D:3.80.10.10	MapMan:35.1	EMBL:AM467397
ProteinID:CAN70423	ProteinID:CAN70423.1	ProteinID:CCB51049	ProteinID:CCB51049.1	ncoils:Coil	UniProt:F6HEY9
EMBL:FN595752	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006950	GO:GO:0006952	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0043531	InterPro:IPR032675	EntrezGene:LOC100257664	wikigene:LOC100257664
InterPro:LRR_dom_sf	InterPro:NB-ARC	InterPro:P-loop_NTPase	PFAM:PF00931	PRINTS:PR00364	PANTHER:PTHR43886
PANTHER:PTHR43886:SF14	InterPro:RX-like_CC	SUPFAM:SSF52058	SUPFAM:SSF52540	UniParc:UPI00015C8115	ArrayExpress:VIT_01s0011g00950
EnsemblPlantsGene:VIT_01s0011g00950	EnsemblPlants:VIT_01s0011g00950.t01	RefSeq:XP_002275042	RefSeq:XP_002275042.1	RefSeq:XP_002275296	RefSeq:XP_002275296.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:806983..809670

Molecular Weight (calculated)

102422.0 Da

IEP (calculated)

9.722

GRAVY (calculated)

-0.235

Length

895 amino acids

Sequence
(BLAST)

001: MDPEIGGGIA GSAVSFLLLK LDVFASREWN LQENIKKAVQ NLGRELRSIE ALLRDAASKK EHDHQFRVWI QNVRDQAYAI EDVLDLFRLD QESVWRRLKM
101: RHSINNLIQD IDRSLQSIQQ TKERYHSMAS TSTNAGNNTD LPVRVAPQFI GNVDTVGLEE PTNKLVSWAL EPKQRLEVMF VVGMAGLGKT TLVHSVYERV
201: KQHFGCNVWI TASKSKTKLN ILTLLVENLG CTITQGADVV ALMHKLRKFL HNKRYVIVLD DLWVKDVWES IRLALPDGKN SRIIVTTRRG DIANSCRDDD
301: SIDIHKLQPL SPQRAEQLFY KKAFSRNGRC PSGLEEVSKS ILQKCDGLPL GIIEIGRFLS RRTPTKNEWK ILHDSLESGL RSSGELSDIM KVLSASYNDL
401: PYHLKYCFLY MSIFPENNLV KRRRLIRLWI AEGFVIEKRG KTLEEVGEEY LNELIDRSLI KANEMDFDGR PTSVGVHSLM LKMILSVSHE ENFCTVCTGA
501: ARNLTQNTRR LSIQKEDFDV SQDLPCVRTF FSFGIGKVKI GSNFKLLKVL DIQGTPLEEF PSVITDLLLL RYLSLRNTNI RSIPRSLGDL HHLETLDLKQ
601: TLVTKVPKAV LQLEKLRHLL VYRYNMESVL PFDIVQGFKA PKRMGALKNL QKLSFVKASG QHRMSRQHRM IQGLENLTQL RKLGIVELAK EDGTRLCHAI
701: EKMRNLHSLN VTSLNIEVPL ELDAMTNPPP LLQRLYLKGP LERFPQWVSS LHDLVRIRLK WSSLAEDPIA ALQNLPYLVE LQLLDAYTGT QLDFRSGKFQ
801: KLKILELQQL EQLKSIIMEE GTLPCLQKLI ISHCSKLVQV PRGIDKLIHL QMLLLHDMPE PFVTRLRKNG GRLRHLVHHI PCIHSYKQGQ LEDLS

Best Arabidopsis Sequence Match ( AT3G07040.1 )
(BLAST)

001: MASATVDFGI GRILSVLENE TLLLSGVHGE IDKMKKELLI MKSFLEDTHK HGGNGSTTTT TQLFQTFVAN TRDLAYQIED ILDEFGYHIH GYRSCAKIWR
101: AFHFPRYMWA RHSIAQKLGM VNVMIQSISD SMKRYYHSEN YQAALLPPID DGDAKWVNNI SESSLFFSEN SLVGIDAPKG KLIGRLLSPE PQRIVVAVVG
201: MGGSGKTTLS ANIFKSQSVR RHFESYAWVT ISKSYVIEDV FRTMIKEFYK EADTQIPAEL YSLGYRELVE KLVEYLQSKR YIVVLDDVWT TGLWREISIA
301: LPDGIYGSRV MMTTRDMNVA SFPYGIGSTK HEIELLKEDE AWVLFSNKAF PASLEQCRTQ NLEPIARKLV ERCQGLPLAI ASLGSMMSTK KFESEWKKVY
401: STLNWELNNN HELKIVRSIM FLSFNDLPYP LKRCFLYCSL FPVNYRMKRK RLIRMWMAQR FVEPIRGVKA EEVADSYLNE LVYRNMLQVI LWNPFGRPKA
501: FKMHDVIWEI ALSVSKLERF CDVYNDDSDG DDAAETMENY GSRHLCIQKE MTPDSIRATN LHSLLVCSSA KHKMELLPSL NLLRALDLED SSISKLPDCL
601: VTMFNLKYLN LSKTQVKELP KNFHKLVNLE TLNTKHSKIE ELPLGMWKLK KLRYLITFRR NEGHDSNWNY VLGTRVVPKI WQLKDLQVMD CFNAEDELIK
701: NLGCMTQLTR ISLVMVRREH GRDLCDSLNK IKRIRFLSLT SIDEEEPLEI DDLIATASIE KLFLAGKLER VPSWFNTLQN LTYLGLRGSQ LQENAILSIQ
801: TLPRLVWLSF YNAYMGPRLR FAQGFQNLKI LEIVQMKHLT EVVIEDGAMF ELQKLYVRAC RGLEYVPRGI ENLINLQELH LIHVSNQLVE RIRGEGSVDR
901: SRVKHIPAIK HYFRTDNGSF YVSLSS

Arabidopsis Description

RPM1Disease resistance protein RPM1 [Source:UniProtKB/Swiss-Prot;Acc:Q39214]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.