Factsheet for VIT_01s0011g01020.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0011g00950.t01	Wine grape	cytosol, nucleus, peroxisome	73.92	74.41
VIT_01s0011g00960.t01	Wine grape	nucleus	70.03	72.45
VIT_01s0011g00970.t01	Wine grape	cytosol	67.59	70.98
VIT_01s0011g00990.t01	Wine grape	cytosol	60.6	68.77
VIT_01s0011g01000.t01	Wine grape	nucleus	82.57	47.21
VIT_05s0020g04930.t01	Wine grape	cytosol	25.42	42.64
VIT_07s0005g06240.t01	Wine grape	cytosol	22.31	40.04
GSMUA_Achr8P25780_001	Banana	cytosol	40.29	39.67
VIT_06s0009g01350.t01	Wine grape	cytosol	26.42	37.9
VIT_07s0005g06180.t01	Wine grape	cytosol	38.29	37.54
VIT_02s0012g02720.t01	Wine grape	cytosol, extracellular	38.18	36.95
VIT_07s0005g06220.t01	Wine grape	cytosol	37.07	36.15
VIT_07s0005g06210.t01	Wine grape	cytosol	37.4	36.08
Os08t0424700-00	Rice	cytosol	34.52	34.29
VIT_07s0005g06200.t01	Wine grape	cytosol, plasma membrane	33.63	33.85
VIT_00s0515g00020.t01	Wine grape	cytosol	29.08	30.9
VIT_06s0009g01360.t01	Wine grape	cytosol	31.85	26.62

Protein Annotations

EntrezGene:100256051	wikigene:100256051	Gene3D:3.40.50.300	Gene3D:3.80.10.10	MapMan:35.1	EMBL:AM463778
ProteinID:CAN70306	ProteinID:CAN70306.1	ProteinID:CCB51044	ProteinID:CCB51044.1	ncoils:Coil	UniProt:F6HEY4
EMBL:FN595752	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006950	GO:GO:0006952	GO:GO:0007154	GO:GO:0007165	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0043531	InterPro:IPR032675	EntrezGene:LOC100256051	wikigene:LOC100256051
InterPro:LRR_dom_sf	InterPro:NB-ARC	InterPro:P-loop_NTPase	PFAM:PF00931	PRINTS:PR00364	PANTHER:PTHR43886
PANTHER:PTHR43886:SF14	InterPro:RX-like_CC	SUPFAM:SSF52058	SUPFAM:SSF52540	UniParc:UPI0002107F43	ArrayExpress:VIT_01s0011g01020
EnsemblPlantsGene:VIT_01s0011g01020	EnsemblPlants:VIT_01s0011g01020.t01	RefSeq:XP_002275317	RefSeq:XP_002275317.2	RefSeq:XP_002275317.3	:

Description

No Description!

Coordinates

chr1:+:901077..903884

Molecular Weight (calculated)

103373.0 Da

IEP (calculated)

7.779

GRAVY (calculated)

-0.288

Length

901 amino acids

Sequence
(BLAST)

001: MNPDLAGGMA DGAVSFLLQK LEAFASTEWN LQENIRNGVR ELQRELWRIE AMMRDADAKK DYDNQFNVWI QEVRTEAYAI EDVLDLFRLH WDQESVWRHL
101: KMWHSISNLI QDINTRLAII KQTKERYQII KEINERYPMM VPTNSVSSET NTYHNVRAAP LILGWGNNTM GIDEPKRKLV SWASKSNQKL KVMFLVGMAG
201: LGKTTLAYRV YEEVKEHFDC HAWIIASKYQ TIDETLRSLL EELGSSTEGS GIVLLMQRLH NFLQHKRYVI VVDNLLVKDV WESIRLALPD GNDNRIIITT
301: RRGDIANSCR DDSIDIHKVQ PLSLQWAEQL FYKKAFLGDG SCPSGLEEVS KSILQKCDGL PLGIIEIGRV LRSKPRQTKY EWKKLHDSLE SELRSGGALS
401: DIMRVFSASY KDLPYHLKYC FLYMSIFPEN NPVKRRRLIR LWIAEGFVTE ERGKTLEEVG EEYLNELIGR SLIKANEMDF DGRPITVGVH SLMHRIILSV
501: SQEENFCTVC AGPEGNLTDK PRRLSIQTGN FDVSQDLTCV RTFFSFSTGR INIGSNFKLL KVLDIQSTPL GNFPSAITDL VLLRYLSLRN TNIRSIPKSL
601: RNLRHLETLD LKQTLVTKVP KAVLQLEKLR HLLVYCYNME SAPFDIVQGF KAPKGIDALK NLQKLSFVKA SGQHRMIQGL DNLTQLRKLG IVELAEEHGA
701: SLCLSIEKMP NLHSLNVTSL NKEELLELDA MTNPPPLLQR LYLRGPLERF PRWVSSLHDL ERIRLKWSSL TENPIGALQN LPNLTELQLL DAYTGTQLDF
801: NSGKFQNLKI LDLEQLKQLR FIIMEDGTLP CLQKLIIRQC NELEHVPVGI DGLHHLNELH LCDMPEKLVA QLKKNGGQFR HLVHHIPYIH SYNQGQLEDL
901: S

Best Arabidopsis Sequence Match ( AT3G07040.1 )
(BLAST)

001: MASATVDFGI GRILSVLENE TLLLSGVHGE IDKMKKELLI MKSFLEDTHK HGGNGSTTTT TQLFQTFVAN TRDLAYQIED ILDEFGYHIH GYRSCAKIWR
101: AFHFPRYMWA RHSIAQKLGM VNVMIQSISD SMKRYYHSEN YQAALLPPID DGDAKWVNNI SESSLFFSEN SLVGIDAPKG KLIGRLLSPE PQRIVVAVVG
201: MGGSGKTTLS ANIFKSQSVR RHFESYAWVT ISKSYVIEDV FRTMIKEFYK EADTQIPAEL YSLGYRELVE KLVEYLQSKR YIVVLDDVWT TGLWREISIA
301: LPDGIYGSRV MMTTRDMNVA SFPYGIGSTK HEIELLKEDE AWVLFSNKAF PASLEQCRTQ NLEPIARKLV ERCQGLPLAI ASLGSMMSTK KFESEWKKVY
401: STLNWELNNN HELKIVRSIM FLSFNDLPYP LKRCFLYCSL FPVNYRMKRK RLIRMWMAQR FVEPIRGVKA EEVADSYLNE LVYRNMLQVI LWNPFGRPKA
501: FKMHDVIWEI ALSVSKLERF CDVYNDDSDG DDAAETMENY GSRHLCIQKE MTPDSIRATN LHSLLVCSSA KHKMELLPSL NLLRALDLED SSISKLPDCL
601: VTMFNLKYLN LSKTQVKELP KNFHKLVNLE TLNTKHSKIE ELPLGMWKLK KLRYLITFRR NEGHDSNWNY VLGTRVVPKI WQLKDLQVMD CFNAEDELIK
701: NLGCMTQLTR ISLVMVRREH GRDLCDSLNK IKRIRFLSLT SIDEEEPLEI DDLIATASIE KLFLAGKLER VPSWFNTLQN LTYLGLRGSQ LQENAILSIQ
801: TLPRLVWLSF YNAYMGPRLR FAQGFQNLKI LEIVQMKHLT EVVIEDGAMF ELQKLYVRAC RGLEYVPRGI ENLINLQELH LIHVSNQLVE RIRGEGSVDR
901: SRVKHIPAIK HYFRTDNGSF YVSLSS

Arabidopsis Description

RPM1Disease resistance protein RPM1 [Source:UniProtKB/Swiss-Prot;Acc:Q39214]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.