Factsheet for PGSC0003DMT400082008

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

cytosol: 22313117
extracellular: 22313117
extracellular: 24773703

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

msms PMID: 24773703 doi

T Bengtsson, D Weighill, E Proux-Wéra, F Levander, S Resjö, DD Burra, LI Moushib, PE Hedley, E Liljeroth, D Jacobson, E Alexandersson, E Andreasson

Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Box 102, SE-230 53 Alnarp, Sweden. erik.alexandersson@slu.se.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g006300.2.1	Tomato	extracellular	93.21	92.92
PGSC0003DMT400081883	Potato	extracellular	68.21	72.46
VIT_06s0004g01190.t01	Wine grape	extracellular	62.35	66.23
GSMUA_Achr7P11330_001	Banana	extracellular, plasma membrane	63.27	61.56
PGSC0003DMT400040186	Potato	extracellular	58.95	58.59
HORVU3Hr1G091750.1	Barley	mitochondrion	29.63	56.14
TraesCS1D01G402200.1	Wheat	cytosol	40.12	52.85
Os03t0234900-01	Rice	extracellular	51.23	49.85
TraesCS4D01G234200.1	Wheat	extracellular	51.23	49.26
Zm00001d028348_P001	Maize	extracellular	50.93	49.11
Os03t0234500-01	Rice	extracellular	50.62	49.1
PGSC0003DMT400061826	Potato	extracellular	50.0	49.09
GSMUA_Achr10P...	Banana	extracellular	52.16	48.99
EER92589	Sorghum	extracellular	50.93	48.96
TraesCS4B01G233000.1	Wheat	extracellular	50.62	48.66
HORVU4Hr1G065000.1	Barley	cytosol	27.16	48.62
TraesCS4A01G076900.1	Wheat	extracellular	50.62	48.52
PGSC0003DMT400026081	Potato	cytosol	38.89	48.46
HORVU4Hr1G064950.2	Barley	extracellular	50.31	48.37
EER95209	Sorghum	extracellular	49.38	48.34
TraesCS7B01G325800.1	Wheat	unclear	51.23	48.26
TraesCS4D01G234000.1	Wheat	extracellular	50.0	48.21
TraesCS4B01G232800.1	Wheat	extracellular	49.69	47.92
TraesCS7D01G417400.1	Wheat	unclear	50.93	47.83
TraesCS3D01G406900.1	Wheat	extracellular	47.53	47.68
TraesCS3B01G446400.1	Wheat	extracellular	47.53	47.68
TraesCS3B01G446800.1	Wheat	extracellular	47.22	47.66
TraesCS3B01G446700.1	Wheat	extracellular	47.22	47.66
TraesCS3D01G407200.1	Wheat	extracellular	47.22	47.66
EER91824	Sorghum	extracellular	49.69	47.63
HORVU3Hr1G091740.1	Barley	extracellular, mitochondrion	42.9	47.44
TraesCS3D01G407100.1	Wheat	extracellular	46.91	47.35
TraesCS4A01G076700.1	Wheat	extracellular	49.07	47.32
PGSC0003DMT400066354	Potato	cytosol	45.37	47.27
TraesCS7A01G424100.1	Wheat	unclear	50.62	47.26
TraesCS3A01G412500.1	Wheat	extracellular	46.91	47.2
PGSC0003DMT400013189	Potato	cytosol	45.06	47.1
TraesCS3B01G446300.1	Wheat	extracellular	46.91	47.06
TraesCS3A01G412400.1	Wheat	extracellular, vacuole	46.91	47.06
EES18269	Sorghum	extracellular	47.22	46.93
TraesCS3B01G446600.1	Wheat	extracellular	46.6	46.75
TraesCS3A01G414600.1	Wheat	extracellular	46.6	46.75
TraesCS3D01G407000.1	Wheat	extracellular	46.3	46.73
TraesCS3B01G446500.1	Wheat	extracellular	46.3	46.73
Zm00001d030199_P002	Maize	extracellular	48.46	46.59
TraesCS1D01G096400.1	Wheat	extracellular	48.77	46.47
EES18266	Sorghum	extracellular, plastid	45.99	46.27
TraesCS1B01G115900.1	Wheat	extracellular	48.77	46.2
Os10t0109300-01	Rice	extracellular	47.84	46.13
Zm00001d028347_P001	Maize	extracellular	47.53	45.97
EES18267	Sorghum	vacuole	45.37	45.65
Zm00001d014341_P001	Maize	extracellular	48.15	45.61
PGSC0003DMT400026090	Potato	extracellular	45.68	45.54
EES18270	Sorghum	vacuole	44.75	45.31
EES19563	Sorghum	extracellular	44.44	45.14
Zm00001d010218_P001	Maize	extracellular, plasma membrane	45.68	44.85
EES18268	Sorghum	extracellular	45.06	44.79
OQU78052	Sorghum	extracellular	44.44	44.58
PGSC0003DMT400058061	Potato	extracellular	45.06	43.84
HORVU7Hr1G098110.3	Barley	plastid	50.62	43.73
TraesCS1A01G104300.1	Wheat	extracellular	37.65	43.57
PGSC0003DMT400016340	Potato	extracellular	43.21	43.34
PGSC0003DMT400009606	Potato	extracellular	43.83	42.9
PGSC0003DMT400040062	Potato	extracellular, golgi	43.83	42.9
Os10t0107000-00	Rice	extracellular	44.14	42.18
HORVU1Hr1G020690.5	Barley	extracellular	47.53	41.96
PGSC0003DMT400029815	Potato	cytosol	36.73	40.07
PGSC0003DMT400041812	Potato	extracellular	41.67	40.06
HORVU3Hr1G091730.1	Barley	plastid	37.04	39.34
TraesCS3B01G446200.1	Wheat	extracellular	26.54	36.29
PGSC0003DMT400058134	Potato	extracellular	42.59	31.01

Protein Annotations

KEGG:00940+1.11.1.7	Gene3D:1.10.420.10	Gene3D:1.10.520.10	EntrezGene:102588377	MapMan:35.1	GO:GO:0003674
GO:GO:0003824	GO:GO:0004601	GO:GO:0005488	GO:GO:0005575	GO:GO:0005576	GO:GO:0006950
GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016491
GO:GO:0020037	GO:GO:0042744	GO:GO:0046872	GO:GO:0055114	GO:GO:0098869	InterPro:Haem_peroxidase
InterPro:Haem_peroxidase_pln/fun/bac	InterPro:IPR002016	UniProt:M1D5G4	PFAM:PF00141	EnsemblPlantsGene:PGSC0003DMG400032199	PGSC:PGSC0003DMG400032199
EnsemblPlants:PGSC0003DMT400082008	PRINTS:PR00458	PRINTS:PR00461	ScanProsite:PS00435	ScanProsite:PS00436	PFscan:PS50873
PANTHER:PTHR31388	PANTHER:PTHR31388:SF28	InterPro:Peroxidase_pln	InterPro:Peroxidases_AS	InterPro:Peroxidases_heam-ligand_BS	SUPFAM:SSF48113
InterPro:Secretory_peroxidase	SignalP:SignalP-noTM	UniParc:UPI0002968F9D	RefSeq:XP_006354190.1	:	:

Description

Peroxidase [Source:PGSC_GENE;Acc:PGSC0003DMG400032199]

Coordinates

chr1:-:1761454..1764298

Molecular Weight (calculated)

34986.2 Da

IEP (calculated)

4.387

GRAVY (calculated)

-0.075

Length

324 amino acids

Sequence
(BLAST)

001: MSFLRFIVPI FFLISIFVAS NAQLSSTFYA TTCPNVTEVV RGVMEQTQRT DVRAGAKIIR LHFHDCFVNG CDGSILLDNA TGIISEKDAA ANVGAGGFEI
101: VDDIKTALEN VCPGVVSCAD ILALASEIGV ALVGGPTWQV LLGRRDSLTA NRTGVDSDIP SPVESLDVMR PQFTNKGMDI TDLVALSGAH TFGRARCRTF
201: QQRLFNFNGS GSPDPTINST YLPTLQGTCP QGNDGNTFEN LDKTTPDNFD NDYYINLQNQ EGLLQTDQEL FSTSGSDTIA IVNRYAGSQT QFFDDFASSM
301: IKLGNIGALT GTNGEIRTDC KRVN

Best Arabidopsis Sequence Match ( AT5G06720.1 )
(BLAST)

001: MAVTNLPTCD GLFIISLIVI VSSIFGTSSA QLNATFYSGT CPNASAIVRS TIQQALQSDT RIGASLIRLH FHDCFVNGCD ASILLDDTGS IQSEKNAGPN
101: VNSARGFNVV DNIKTALENA CPGVVSCSDV LALASEASVS LAGGPSWTVL LGRRDSLTAN LAGANSSIPS PIESLSNITF KFSAVGLNTN DLVALSGAHT
201: FGRARCGVFN NRLFNFSGTG NPDPTLNSTL LSTLQQLCPQ NGSASTITNL DLSTPDAFDN NYFANLQSND GLLQSDQELF STTGSSTIAI VTSFASNQTL
301: FFQAFAQSMI NMGNISPLTG SNGEIRLDCK KVNGS

Arabidopsis Description

PER53Peroxidase 53 [Source:UniProtKB/Swiss-Prot;Acc:Q42578]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.