Factsheet for Solyc02g092260.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 7
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055176	Potato	plastid	98.32	98.32
Solyc03g043950.2.1	Tomato	plastid	11.11	10.95
KRH58132	Soybean	cytosol	3.2	5.4
Os03t0431200-00	Rice	cytosol, mitochondrion, plastid	3.2	3.75
TraesCS7A01G241100.3	Wheat	plastid	3.2	3.25
Os07t0585600-01	Rice	cytosol	2.86	3.19
Zm00001d047817_P001	Maize	cytosol	1.68	2.86
VIT_00s0670g00020.t01	Wine grape	plastid	1.85	2.65
TraesCS2D01G196900.1	Wheat	mitochondrion, plastid	2.36	2.41
HORVU2Hr1G035970.1	Barley	mitochondrion, plastid	2.36	2.41
TraesCS2B01G215900.1	Wheat	mitochondrion, plastid	2.36	2.41
VIT_00s0823g00020.t01	Wine grape	plastid	1.85	2.36
TraesCS2A01G191100.1	Wheat	mitochondrion, plastid	2.19	2.24
EER99616	Sorghum	plastid	1.68	1.6
Zm00001d010837_P001	Maize	plastid	1.35	1.52
Zm00001d021956_P002	Maize	plastid	1.52	1.47
KRH58131	Soybean	extracellular	0.51	1.12

Protein Annotations

KEGG:00220+2.3.1.1	Gene3D:3.40.630.30	MapMan:4.1.1.1.1.1	InterPro:AceGlu_kinase-like_sf	InterPro:Acyl_CoA_acyltransferase	InterPro:Asp/Glu/Uridylate_kinase
InterPro:GNAT_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004042	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006526	GO:GO:0008080	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	InterPro:IPR000182	InterPro:IPR036393	UniProt:K4BD22
HAMAP:MF_01105	InterPro:NAGS_kin	InterPro:NH2A_AcTrfase	PFAM:PF00583	PFAM:PF00696	PFscan:PS51186
PANTHER:PTHR30602	PANTHER:PTHR30602:SF4	SUPFAM:SSF53633	SUPFAM:SSF55729	EnsemblPlantsGene:Solyc02g092260.2	EnsemblPlants:Solyc02g092260.2.1
TIGRFAMs:TIGR01890	UniParc:UPI0002767F43	:	:	:	:

Description

No Description!

Coordinates

chr2:+:53397132..53403769

Molecular Weight (calculated)

65717.8 Da

IEP (calculated)

7.611

GRAVY (calculated)

-0.158

Length

594 amino acids

Sequence
(BLAST)

001: MAAFCGNSIW TPQARNCFQR GITCSNSLKF LPFQFSCCKR LWGRSLKCRV LGETDDVGFE VSSAIKDDLF VGFFREAWPY FLAHRGSTFV VLISAEIVDS
101: PHLDHLLMDI SLLHGLGIKF VLVPGTHVQI DRLLTERGSE AKYVGRYRIT DPDSLEAAMD TSGRIRLMIE AKLSPGPSLT GVRRHGDNSR WHDSVGVASG
201: NFLSAKKRGV VEGIDYSSTG EVKKIDVSRI RERLDQDSIV LLSNLGYSSS GEVLNCNTYE VATACALALG AEKLICIIDG PILDESSRLI RFLTLQDADM
301: LVRRRAEQSE TAANYVKAVS QEDFNRLGYH GSNGSLPSQN GDVYSQRYNP TFQNGIGFDN GNGLWSSEQG FAIGGQEKLS RSNGYLSELA AAAFVCRGGV
401: QRVHLLDGTI GGVLLKELFQ RDGVGTMVAS DLYEGARMAR VSDVPGIKQL LQPLEESGTL IRRTEEELVK ALHSFIIVER EGHIIACAAL FPYFEEKCGE
501: VAAIAVSPDC RGQGQGDKLL DYIEKKASSL GLQMLFLLTT RTADWFVRRG FSECSIDHIP EQRRKKINLA RRSKYYMKKL LPDKSGIRID CTFA

Best Arabidopsis Sequence Match ( AT2G22910.1 )
(BLAST)

001: MTERGAMVVS SSTCYVPFRC PQARKDFAFV EPSKKLNPNR VLIKPPVYTY SPALTAAKCN IFDYAETGEN LVGDKQFVRW FREAWPYLWA HRSCTFVVTI
101: SGDVLDGPYC DLVLKDIAFL HHLGIKFVLV PGTQVQIDQL LAERGREPTY VGRYRVTDSA SLQAAKEAAG AISVMIEAKL SPGPSIYNIR RHGDSSRLHE
201: TGVRVDTGNF FAAKRRGVVD GVDFGATGLV KKIDVDRIRE RLDSGSVVLL RNLGHSSTGE VLNCNTYEVA TACALAIGAD KLICIMDGPV LDENGHLVRF
301: LTLQEADTLV RKRAQQSEIA ANYVKAVGDG GISSFPEPLG YNGMVTTPNN HIGRPIWEKL SPTFQNGVGF DNGNGLWSGE QGFAIGGEER ISRLNGYLSE
401: LAAAAFVCRG GVKRVHLLDG TISGVLLLEL FKRDGMGTMV ASDVYEGNRE AKVEDLAGIR QIIKPLEESG ALVRRTDEEL LRALDSFVVV EREGHIIACA
501: ALFPFFEEKC GEVAAIAVAS DCRGQGQGDK LLDYIEKKAS ALGLEMLFLL TTRTADWFVR RGFQECPIEM IPEARRERIN LSRRSKYYMK KLLPDRSGIS
601: VVRTFQYDS

Arabidopsis Description

NAGS1Probable amino-acid acetyltransferase NAGS1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q84JF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.