Factsheet for Solyc11g042930.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 3
golgi 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024783	Potato	cytosol	95.48	98.67
Solyc01g111650.2.1	Tomato	cytosol	87.74	87.18
Solyc10g055580.1.1	Tomato	cytosol	83.87	86.67
GSMUA_Achr10P...	Banana	cytosol	83.87	81.76
GSMUA_Achr4P04860_001	Banana	cytosol	83.23	80.62
GSMUA_Achr4P05110_001	Banana	cytosol	83.23	80.12
Solyc10g055610.1.1	Tomato	cytosol	74.84	77.33
GSMUA_Achr9P24070_001	Banana	cytosol	80.0	77.02
Solyc01g111640.2.1	Tomato	cytosol	76.77	75.32
Solyc10g055570.1.1	Tomato	cytosol	49.68	67.54
Solyc10g055590.1.1	Tomato	cytosol	42.58	63.46
Solyc06g043270.1.1	Tomato	cytosol	36.77	61.29
Solyc03g112710.1.1	Tomato	cytosol	58.06	59.6
GSMUA_Achr8P33930_001	Banana	cytosol	80.65	59.24
Solyc11g008230.1.1	Tomato	cytosol	50.32	49.37
Solyc03g093190.1.1	Tomato	cytosol	35.48	45.08
Solyc11g008400.1.1	Tomato	cytosol	49.68	42.78
Solyc11g008240.1.1	Tomato	cytosol	42.58	41.77
Solyc11g008420.1.1	Tomato	cytosol	40.65	33.33

Protein Annotations

MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019538	UniProt:K4D860	PFAM:PF01466	PFAM:PF03931	PIRSF:PIRSF028729
PANTHER:PTHR11165	PANTHER:PTHR11165:SF88	InterPro:SKP1	InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf
SMART:SM00512	SUPFAM:SSF54695	SUPFAM:SSF81382	InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	EnsemblPlantsGene:Solyc11g042930.1
EnsemblPlants:Solyc11g042930.1.1	UniParc:UPI000276A138	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr11:+:33988342..33990671

Molecular Weight (calculated)

17498.6 Da

IEP (calculated)

4.265

GRAVY (calculated)

-0.401

Length

155 amino acids

Sequence
(BLAST)

001: MASSKMIVLK SSDGETFEVD EAVALESQTI KHMIEDDCAD TSIPLPNVTS KILAKVIEYC KRHVDASKTE DKASEDELKT FDADFVKVDQ GTLFDLILAA
101: NYLNIKSLLD LTCQTVADMI KGKTPEEIRK TFNIKNDFTP EEEEEVRREN AWAFE

Best Arabidopsis Sequence Match ( AT5G42190.1 )
(BLAST)

001: MSTVRKITLK SSDGENFEID EAVALESQTI KHMIEDDCTD NGIPLPNVTS KILSKVIEYC KRHVEAAEKS ETTADAAAAT TTTTVASGSS DEDLKTWDSE
101: FIKVDQGTLF DLILAANYLN IKGLLDLTCQ TVADMIKGKT PEEIRKTFNI KNDFTPEEEE EVRRENQWAF E

Arabidopsis Description

SKP1BSKP1-like protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9FHW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.