Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- golgi 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P05110_001 | Banana | cytosol | 94.41 | 94.41 |
| GSMUA_Achr4P04860_001 | Banana | cytosol | 91.93 | 92.5 |
| GSMUA_Achr10P... | Banana | cytosol | 86.96 | 88.05 |
| PGSC0003DMT400068727 | Potato | cytosol | 75.78 | 81.33 |
| PGSC0003DMT400024783 | Potato | cytosol | 75.16 | 80.67 |
| Solyc11g042930.1.1 | Tomato | extracellular | 77.02 | 80.0 |
| GSMUA_Achr8P13060_001 | Banana | cytosol | 80.12 | 76.79 |
| Solyc10g055580.1.1 | Tomato | cytosol | 70.19 | 75.33 |
| PGSC0003DMT400068720 | Potato | cytosol | 69.57 | 75.17 |
| PGSC0003DMT400068726 | Potato | cytosol | 68.94 | 74.0 |
| Solyc10g055610.1.1 | Tomato | cytosol | 65.84 | 70.67 |
| GSMUA_Achr11P... | Banana | cytosol | 64.6 | 66.24 |
| GSMUA_Achr8P33930_001 | Banana | cytosol | 83.85 | 63.98 |
| GSMUA_Achr4P25740_001 | Banana | cytosol | 44.1 | 47.97 |
| GSMUA_Achr3P26800_001 | Banana | cytosol | 45.34 | 45.62 |
| GSMUA_Achr4P25750_001 | Banana | cytosol | 49.07 | 44.63 |
Protein Annotations
| MapMan:19.2.2.8.1.1 | Gene3D:3.30.710.10 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr9G24070_001 | EnsemblPlants:GSMUA_Achr9P24070_001 | EnsemblPlants:GSMUA_Achr9T24070_001 | UniProt:M0U314 |
| PFAM:PF01466 | PFAM:PF03931 | PIRSF:PIRSF028729 | PANTHER:PTHR11165 | PANTHER:PTHR11165:SF89 | InterPro:SKP1 |
| InterPro:SKP1-like | InterPro:SKP1-like_dim_sf | InterPro:SKP1/BTB/POZ_sf | SMART:SM00512 | SUPFAM:SSF54695 | SUPFAM:SSF81382 |
| InterPro:Skp1_comp_POZ | InterPro:Skp1_comp_dimer | UniParc:UPI000295BF17 | SEG:seg | : | : |
Description
SKP1-like protein 4 [Source:GMGC_GENE;Acc:GSMUA_Achr9G24070_001]
Coordinates
chr9:-:28899957..28904721
Molecular Weight (calculated)
17947.2 Da
IEP (calculated)
4.247
GRAVY (calculated)
-0.350
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKTIMLKSS DGEVFEVDEA VAMESQTIKH MIEDDCAENG IPLPNVTSAI LAKVIEYCRK HVEASAAAAS KSSDDGSKPT DDVIKSWDAE FVKVDQATLF
101: DLILAANYLN IKGLLDLTCQ TVADMIKGKT PEEIRKTFNI KNDFTPEEEE EVRRENQWAF E
101: DLILAANYLN IKGLLDLTCQ TVADMIKGKT PEEIRKTFNI KNDFTPEEEE EVRRENQWAF E
001: MSAKKIVLKS SDGESFEVEE AVALESQTIA HMVEDDCVDN GVPLPNVTSK ILAKVIEYCK RHVEAAASKA EAVEGAATSD DDLKAWDADF MKIDQATLFE
101: LILAANYLNI KNLLDLTCQT VADMIKGKTP EEIRTTFNIK NDFTPEEEEE VRRENQWAFE
101: LILAANYLNI KNLLDLTCQT VADMIKGKTP EEIRTTFNIK NDFTPEEEEE VRRENQWAFE
Arabidopsis Description
SKP1ASKP1-like protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q39255]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.