Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- golgi 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P05110_001 | Banana | cytosol | 78.57 | 81.99 |
| GSMUA_Achr4P04860_001 | Banana | cytosol | 77.98 | 81.88 |
| PGSC0003DMT400015825 | Potato | cytosol | 74.4 | 80.13 |
| GSMUA_Achr9P24070_001 | Banana | cytosol | 76.79 | 80.12 |
| Solyc01g111650.2.1 | Tomato | cytosol | 73.81 | 79.49 |
| GSMUA_Achr10P... | Banana | cytosol | 75.0 | 79.25 |
| PGSC0003DMT400015827 | Potato | cytosol | 70.24 | 74.68 |
| Solyc01g111640.2.1 | Tomato | cytosol | 68.45 | 72.78 |
| GSMUA_Achr11P... | Banana | cytosol | 61.31 | 65.61 |
| GSMUA_Achr8P33930_001 | Banana | cytosol | 76.79 | 61.14 |
| GSMUA_Achr4P25740_001 | Banana | cytosol | 42.86 | 48.65 |
| GSMUA_Achr3P26800_001 | Banana | cytosol | 44.64 | 46.88 |
| GSMUA_Achr4P25750_001 | Banana | cytosol | 47.62 | 45.2 |
Protein Annotations
| MapMan:19.2.2.8.1.1 | Gene3D:3.30.710.10 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr8G13060_001 | EnsemblPlants:GSMUA_Achr8P13060_001 | EnsemblPlants:GSMUA_Achr8T13060_001 | UniProt:M0TQ09 |
| PFAM:PF01466 | PFAM:PF03931 | PIRSF:PIRSF028729 | PANTHER:PTHR11165 | PANTHER:PTHR11165:SF89 | InterPro:SKP1 |
| InterPro:SKP1-like | InterPro:SKP1-like_dim_sf | InterPro:SKP1/BTB/POZ_sf | SMART:SM00512 | SUPFAM:SSF54695 | SUPFAM:SSF81382 |
| InterPro:Skp1_comp_POZ | InterPro:Skp1_comp_dimer | UniParc:UPI000295BDA9 | SEG:seg | : | : |
Description
SKP1-like protein 1A [Source:GMGC_GENE;Acc:GSMUA_Achr8G13060_001]
Coordinates
chr8:-:9829980..9836111
Molecular Weight (calculated)
18602.8 Da
IEP (calculated)
4.293
GRAVY (calculated)
-0.440
Length
168 amino acids
Sequence
(BLAST)
(BLAST)
001: MASAVAADGE KRKVTLKSSD GEEFEVAEAA AMESQTIRHM IEDGCAESGI PLPNVTSRIL AKVIEYCNKH VDASSKSGED GATGRVADDD LKAWDAEFVK
101: VDQATLFDLI LAANYLNIKS LLDLTCQTVA DMIKGKTPEE IRKTFNIKND FTPEEEEEIR RENQWAFE
101: VDQATLFDLI LAANYLNIKS LLDLTCQTVA DMIKGKTPEE IRKTFNIKND FTPEEEEEIR RENQWAFE
001: MAETKKMIIL KSSDGESFEI EEAVAVKSQT IKHMIEDDCA DNGIPLPNVT GAILAKVIEY CKKHVEAAAE AGGDKDFYGS AENDELKNWD SEFVKVDQPT
101: LFDLILAANY LNIGGLLDLT CKAVADQMRG KTPEQMRAHF NIKNDYTPEE EAEVRNENKW AFE
101: LFDLILAANY LNIGGLLDLT CKAVADQMRG KTPEQMRAHF NIKNDYTPEE EAEVRNENKW AFE
Arabidopsis Description
ASK4SK4 [Source:UniProtKB/TrEMBL;Acc:A0A178W187]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.