Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P04860_001 | Banana | cytosol | 89.31 | 88.75 |
| GSMUA_Achr4P05110_001 | Banana | cytosol | 89.31 | 88.2 |
| GSMUA_Achr9P24070_001 | Banana | cytosol | 88.05 | 86.96 |
| PGSC0003DMT400024783 | Potato | cytosol | 81.13 | 86.0 |
| PGSC0003DMT400068727 | Potato | cytosol | 79.25 | 84.0 |
| Solyc11g042930.1.1 | Tomato | extracellular | 81.76 | 83.87 |
| Solyc10g055580.1.1 | Tomato | cytosol | 73.58 | 78.0 |
| PGSC0003DMT400068726 | Potato | cytosol | 72.33 | 76.67 |
| PGSC0003DMT400068720 | Potato | cytosol | 71.7 | 76.51 |
| GSMUA_Achr8P13060_001 | Banana | cytosol | 79.25 | 75.0 |
| Solyc10g055610.1.1 | Tomato | cytosol | 68.55 | 72.67 |
| GSMUA_Achr11P... | Banana | cytosol | 67.92 | 68.79 |
| GSMUA_Achr8P33930_001 | Banana | cytosol | 83.02 | 62.56 |
| GSMUA_Achr4P25740_001 | Banana | cytosol | 45.28 | 48.65 |
| GSMUA_Achr3P26800_001 | Banana | cytosol | 45.91 | 45.62 |
| GSMUA_Achr4P25750_001 | Banana | cytosol | 47.8 | 42.94 |
Protein Annotations
| MapMan:19.2.2.8.1.1 | Gene3D:3.30.710.10 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr10G07400_001 | EnsemblPlants:GSMUA_Achr10P07400_001 | EnsemblPlants:GSMUA_Achr10T07400_001 | UniProt:M0RG66 |
| PFAM:PF01466 | PFAM:PF03931 | PIRSF:PIRSF028729 | PANTHER:PTHR11165 | PANTHER:PTHR11165:SF88 | InterPro:SKP1 |
| InterPro:SKP1-like | InterPro:SKP1-like_dim_sf | InterPro:SKP1/BTB/POZ_sf | SMART:SM00512 | SUPFAM:SSF54695 | SUPFAM:SSF81382 |
| InterPro:Skp1_comp_POZ | InterPro:Skp1_comp_dimer | UniParc:UPI000294CEDD | SEG:seg | : | : |
Description
SKP1-like protein 1A [Source:GMGC_GENE;Acc:GSMUA_Achr10G07400_001]
Coordinates
chr10:+:17618160..17621930
Molecular Weight (calculated)
17846.9 Da
IEP (calculated)
4.203
GRAVY (calculated)
-0.422
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKTITLRSS DGEVFEVEEA VAMESQTIKH MIEDDCADNG IPLPNVTSKI LAKVVEYCKK HVDAAARSSS SDDAPSVTED DLKTWDADFV KVDQATLFDL
101: ILAANYLNIK GLLDLTCQTV ADMIKGKTPE EIRKTFNIKN DFTPEEEEEV RRENQWAFE
101: ILAANYLNIK GLLDLTCQTV ADMIKGKTPE EIRKTFNIKN DFTPEEEEEV RRENQWAFE
001: MSAKKIVLKS SDGESFEVEE AVALESQTIA HMVEDDCVDN GVPLPNVTSK ILAKVIEYCK RHVEAAASKA EAVEGAATSD DDLKAWDADF MKIDQATLFE
101: LILAANYLNI KNLLDLTCQT VADMIKGKTP EEIRTTFNIK NDFTPEEEEE VRRENQWAFE
101: LILAANYLNI KNLLDLTCQT VADMIKGKTP EEIRTTFNIK NDFTPEEEEE VRRENQWAFE
Arabidopsis Description
SKP1ASKP1-like protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q39255]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.