Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- golgi 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P05110_001 | Banana | cytosol | 96.25 | 95.65 |
| GSMUA_Achr9P24070_001 | Banana | cytosol | 92.5 | 91.93 |
| GSMUA_Achr10P... | Banana | cytosol | 88.75 | 89.31 |
| PGSC0003DMT400024783 | Potato | cytosol | 78.75 | 84.0 |
| Solyc11g042930.1.1 | Tomato | extracellular | 80.62 | 83.23 |
| PGSC0003DMT400068727 | Potato | cytosol | 77.5 | 82.67 |
| GSMUA_Achr8P13060_001 | Banana | cytosol | 81.88 | 77.98 |
| Solyc10g055580.1.1 | Tomato | cytosol | 71.88 | 76.67 |
| PGSC0003DMT400068720 | Potato | cytosol | 71.25 | 76.51 |
| PGSC0003DMT400068726 | Potato | cytosol | 70.62 | 75.33 |
| Solyc10g055610.1.1 | Tomato | cytosol | 67.5 | 72.0 |
| GSMUA_Achr11P... | Banana | cytosol | 66.88 | 68.15 |
| GSMUA_Achr8P33930_001 | Banana | cytosol | 85.62 | 64.93 |
| GSMUA_Achr4P25740_001 | Banana | cytosol | 46.25 | 50.0 |
| GSMUA_Achr3P26800_001 | Banana | cytosol | 46.25 | 46.25 |
| GSMUA_Achr4P25750_001 | Banana | cytosol | 50.0 | 45.2 |
Protein Annotations
| MapMan:19.2.2.8.1.1 | Gene3D:3.30.710.10 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr4G04860_001 | EnsemblPlants:GSMUA_Achr4P04860_001 | EnsemblPlants:GSMUA_Achr4T04860_001 | UniProt:M0SL53 |
| PFAM:PF01466 | PFAM:PF03931 | PIRSF:PIRSF028729 | PANTHER:PTHR11165 | PANTHER:PTHR11165:SF89 | InterPro:SKP1 |
| InterPro:SKP1-like | InterPro:SKP1-like_dim_sf | InterPro:SKP1/BTB/POZ_sf | SMART:SM00512 | SUPFAM:SSF54695 | SUPFAM:SSF81382 |
| InterPro:Skp1_comp_POZ | InterPro:Skp1_comp_dimer | UniParc:UPI000294F719 | SEG:seg | : | : |
Description
SKP1-like protein 1B [Source:GMGC_GENE;Acc:GSMUA_Achr4G04860_001]
Coordinates
chr4:-:3805234..3809958
Molecular Weight (calculated)
17917.1 Da
IEP (calculated)
4.265
GRAVY (calculated)
-0.422
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MKTITLKSSD GEVFEVDEAV AMESQTIKHM IEDDCAENGI PLPNVTSKIL AKVIEYCKKH VDASAAASSK SPDDASKLAD DELKSWDAEF VKVDQATLFD
101: LILAANYLNI KGLLDLTCQT VADMIKGKTP EEIRKTFNIK NDFTPEEEEE VRRENQWAFE
101: LILAANYLNI KGLLDLTCQT VADMIKGKTP EEIRKTFNIK NDFTPEEEEE VRRENQWAFE
001: MSTVRKITLK SSDGENFEID EAVALESQTI KHMIEDDCTD NGIPLPNVTS KILSKVIEYC KRHVEAAEKS ETTADAAAAT TTTTVASGSS DEDLKTWDSE
101: FIKVDQGTLF DLILAANYLN IKGLLDLTCQ TVADMIKGKT PEEIRKTFNI KNDFTPEEEE EVRRENQWAF E
101: FIKVDQGTLF DLILAANYLN IKGLLDLTCQ TVADMIKGKT PEEIRKTFNI KNDFTPEEEE EVRRENQWAF E
Arabidopsis Description
SKP1BSKP1-like protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9FHW7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.