Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- golgi 2
- mitochondrion 3
- cytosol 2
- nucleus 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P05110_001 | Banana | cytosol | 65.88 | 86.34 |
| GSMUA_Achr4P04860_001 | Banana | cytosol | 64.93 | 85.62 |
| GSMUA_Achr9P24070_001 | Banana | cytosol | 63.98 | 83.85 |
| GSMUA_Achr10P... | Banana | cytosol | 62.56 | 83.02 |
| PGSC0003DMT400024783 | Potato | cytosol | 57.35 | 80.67 |
| Solyc11g042930.1.1 | Tomato | extracellular | 59.24 | 80.65 |
| PGSC0003DMT400068727 | Potato | cytosol | 56.4 | 79.33 |
| GSMUA_Achr8P13060_001 | Banana | cytosol | 61.14 | 76.79 |
| Solyc10g055580.1.1 | Tomato | cytosol | 53.08 | 74.67 |
| PGSC0003DMT400068720 | Potato | cytosol | 51.66 | 73.15 |
| PGSC0003DMT400068726 | Potato | cytosol | 51.18 | 72.0 |
| Solyc10g055610.1.1 | Tomato | cytosol | 49.29 | 69.33 |
| GSMUA_Achr11P... | Banana | cytosol | 46.92 | 63.06 |
| GSMUA_Achr4P25740_001 | Banana | cytosol | 34.12 | 48.65 |
| GSMUA_Achr3P26800_001 | Banana | cytosol | 35.07 | 46.25 |
| GSMUA_Achr4P25750_001 | Banana | cytosol | 36.49 | 43.5 |
Protein Annotations
| MapMan:19.2.2.8.1.1 | Gene3D:3.30.710.10 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr8G33930_001 | EnsemblPlants:GSMUA_Achr8P33930_001 | EnsemblPlants:GSMUA_Achr8T33930_001 | UniProt:M0TVZ5 |
| PFAM:PF01466 | PFAM:PF03931 | PIRSF:PIRSF028729 | PFscan:PS51257 | PANTHER:PTHR11165 | PANTHER:PTHR11165:SF89 |
| InterPro:SKP1 | InterPro:SKP1-like | InterPro:SKP1-like_dim_sf | InterPro:SKP1/BTB/POZ_sf | SMART:SM00512 | SUPFAM:SSF54695 |
| SUPFAM:SSF81382 | InterPro:Skp1_comp_POZ | InterPro:Skp1_comp_dimer | UniParc:UPI000295FE9A | SEG:seg | : |
Description
SKP1-like protein 1A [Source:GMGC_GENE;Acc:GSMUA_Achr8G33930_001]
Coordinates
chr8:-:34837248..34840766
Molecular Weight (calculated)
23666.3 Da
IEP (calculated)
4.698
GRAVY (calculated)
-0.237
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MLRVYKDTPI ISGASVLYLS VGCARLRVRS VGRFSSPFSL PRPISCSIRS DPIAMDKKII LKSSDGEEFE VDVAVAMESQ TIRHMIEDDC FENGVPLPNV
101: TSKILAKVIE YCRKHVDAAS NSSGDASKVP DEELKAWDAD FVKVDQATLF DLILAANYLN IKGLLDLTCQ TVADMIKGKT PEEIRKTFNI KNDFTPEEEE
201: EVRRENQWAF E
101: TSKILAKVIE YCRKHVDAAS NSSGDASKVP DEELKAWDAD FVKVDQATLF DLILAANYLN IKGLLDLTCQ TVADMIKGKT PEEIRKTFNI KNDFTPEEEE
201: EVRRENQWAF E
001: MSAKKIVLKS SDGESFEVEE AVALESQTIA HMVEDDCVDN GVPLPNVTSK ILAKVIEYCK RHVEAAASKA EAVEGAATSD DDLKAWDADF MKIDQATLFE
101: LILAANYLNI KNLLDLTCQT VADMIKGKTP EEIRTTFNIK NDFTPEEEEE VRRENQWAFE
101: LILAANYLNI KNLLDLTCQT VADMIKGKTP EEIRTTFNIK NDFTPEEEEE VRRENQWAFE
Arabidopsis Description
SKP1ASKP1-like protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q39255]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.