Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | cytosol | 68.79 | 67.92 |
| GSMUA_Achr4P04860_001 | Banana | cytosol | 68.15 | 66.88 |
| GSMUA_Achr4P05110_001 | Banana | cytosol | 66.88 | 65.22 |
| GSMUA_Achr9P24070_001 | Banana | cytosol | 66.24 | 64.6 |
| GSMUA_Achr8P13060_001 | Banana | cytosol | 65.61 | 61.31 |
| GSMUA_Achr8P33930_001 | Banana | cytosol | 63.06 | 46.92 |
| GSMUA_Achr4P25740_001 | Banana | cytosol | 40.76 | 43.24 |
| GSMUA_Achr3P26800_001 | Banana | cytosol | 43.95 | 43.12 |
| GSMUA_Achr4P25750_001 | Banana | cytosol | 42.04 | 37.29 |
Protein Annotations
| MapMan:19.2.2.8.1.1 | Gene3D:3.30.710.10 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr11G07190_001 | EnsemblPlants:GSMUA_Achr11P07190_001 | EnsemblPlants:GSMUA_Achr11T07190_001 | UniProt:M0RQ49 |
| PFAM:PF01466 | PFAM:PF03931 | PIRSF:PIRSF028729 | PANTHER:PTHR11165 | PANTHER:PTHR11165:SF89 | InterPro:SKP1 |
| InterPro:SKP1-like | InterPro:SKP1-like_dim_sf | InterPro:SKP1/BTB/POZ_sf | SMART:SM00512 | SUPFAM:SSF54695 | SUPFAM:SSF81382 |
| InterPro:Skp1_comp_POZ | InterPro:Skp1_comp_dimer | UniParc:UPI000294AA79 | SEG:seg | : | : |
Description
SKP1-like protein 4 [Source:GMGC_GENE;Acc:GSMUA_Achr11G07190_001]
Coordinates
chr11:-:5620015..5623045
Molecular Weight (calculated)
17570.6 Da
IEP (calculated)
4.031
GRAVY (calculated)
-0.235
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MARTIKLRSS DGEVFEVEEA VAMESQTIKH VIEDDCADGG ITLYNVTSDI LVKVLEYCKK HVDAAVGSFI KVLGGVDKDL ESWDAEFVNV DLATLVDISN
101: AANYLNIEGL LDLTTQAIAD NIKGKKPQEI REIFNIENEF TPEDEERVRE ENSWAFE
101: AANYLNIEGL LDLTTQAIAD NIKGKKPQEI REIFNIENEF TPEDEERVRE ENSWAFE
001: MAETKKMIIL KSSDGESFEI EEAVAVKSQT IKHMIEDDCA DNGIPLPNVT GAILAKVIEY CKKHVEAAAE AGGDKDFYGS AENDELKNWD SEFVKVDQPT
101: LFDLILAANY LNIGGLLDLT CKAVADQMRG KTPEQMRAHF NIKNDYTPEE EAEVRNENKW AFE
101: LFDLILAANY LNIGGLLDLT CKAVADQMRG KTPEQMRAHF NIKNDYTPEE EAEVRNENKW AFE
Arabidopsis Description
ASK4SK4 [Source:UniProtKB/TrEMBL;Acc:A0A178W187]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.