Factsheet for GSMUA_Achr4P25740_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU87046	Sorghum	cytosol	43.92	48.51
GSMUA_Achr4P04860_001	Banana	cytosol	50.0	46.25
GSMUA_Achr4P05110_001	Banana	cytosol	50.0	45.96
GSMUA_Achr10P...	Banana	cytosol	48.65	45.28
TraesCS6A01G000300.1	Wheat	cytosol	49.32	44.79
TraesCS6B01G004300.1	Wheat	cytosol	49.32	44.79
VIT_19s0085g00180.t01	Wine grape	cytosol	45.95	44.74
TraesCS5B01G474100.1	Wheat	cytosol	48.65	44.44
GSMUA_Achr9P24070_001	Banana	cytosol	47.97	44.1
TraesCS5A01G462800.1	Wheat	cytosol	39.86	44.03
TraesCS2D01G560500.1	Wheat	cytosol	48.65	43.9
TraesCS2D01G560700.1	Wheat	cytosol	48.65	43.9
TraesCS4A01G366400.1	Wheat	cytosol	48.65	43.9
EES06093	Sorghum	cytosol	50.0	43.79
TraesCS6D01G044400.1	Wheat	cytosol	39.86	43.7
TraesCS2D01G560300.1	Wheat	cytosol	47.97	43.29
TraesCS3B01G308600.1	Wheat	cytosol	47.3	42.94
EES13900	Sorghum	cytosol	48.65	42.86
GSMUA_Achr8P13060_001	Banana	cytosol	48.65	42.86
HORVU5Hr1G110810.1	Barley	cytosol	44.59	42.86
TraesCS7D01G194900.1	Wheat	cytosol	50.68	42.86
PGSC0003DMT400088621	Potato	cytosol	33.78	42.73
TraesCS2D01G560400.1	Wheat	cytosol	47.3	42.68
TraesCS3B01G566400.1	Wheat	cytosol	41.22	42.66
TraesCS7A01G193600.1	Wheat	cytosol	39.19	42.65
HORVU5Hr1G110840.1	Barley	cytosol	50.68	42.61
TraesCS6D01G045500.1	Wheat	cytosol	48.65	42.6
TraesCS6B01G053400.1	Wheat	cytosol	39.19	42.34
TraesCS5D01G475400.1	Wheat	golgi, plastid, unclear	50.0	42.29
Os11t0456300-01	Rice	plasma membrane	49.32	42.2
TraesCS2B01G590600.1	Wheat	cytosol	49.32	41.95
TraesCS2D01G420100.1	Wheat	cytosol	49.32	41.71
TraesCS5D01G475600.1	Wheat	cytosol	49.32	41.71
TraesCS6D01G001600.1	Wheat	cytosol	49.32	41.71
TraesCS7B01G098900.1	Wheat	cytosol	49.32	41.71
EES09697	Sorghum	cytosol	49.32	41.48
Zm00001d049230_P001	Maize	mitochondrion	49.32	41.48
TraesCS7D01G016900.1	Wheat	cytosol	47.3	41.42
TraesCS7A01G498800.1	Wheat	cytosol	45.95	41.21
Os09t0412050-00	Rice	cytosol	46.62	41.07
CDY03015	Canola	cytosol	41.89	41.06
PGSC0003DMT400088820	Potato	cytosol	41.89	41.06
PGSC0003DMT400093573	Potato	cytosol	41.89	41.06
Os08t0375500-00	Rice	cytosol	46.62	40.83
GSMUA_Achr11P...	Banana	cytosol	43.24	40.76
TraesCS3D01G509600.1	Wheat	cytosol	47.3	40.7
TraesCS4A01G472600.1	Wheat	cytosol	47.3	40.7
TraesCS7A01G020600.1	Wheat	cytosol	47.3	40.7
Os09t0539500-01	Rice	cytosol, plasma membrane, plastid	47.97	40.57
HORVU5Hr1G110850.1	Barley	cytosol	48.65	40.45
PGSC0003DMT400038385	Potato	cytosol	41.22	40.4
PGSC0003DMT400090609	Potato	cytosol	41.22	40.4
Os08t0375700-00	Rice	cytosol	45.95	40.24
HORVU7Hr1G099840.1	Barley	cytosol	47.3	40.0
HORVU5Hr1G110720.2	Barley	cytosol	47.97	39.89
HORVU5Hr1G110800.1	Barley	cytosol	47.97	39.89
HORVU5Hr1G110820.2	Barley	cytosol	47.97	39.89
TraesCS2B01G442100.1	Wheat	mitochondrion	47.97	39.89
HORVU2Hr1G115410.2	Barley	cytosol	45.27	39.88
Solyc03g112710.1.1	Tomato	cytosol	40.54	39.74
HORVU5Hr1G110830.3	Barley	cytosol	47.97	39.66
GSMUA_Achr4P25750_001	Banana	cytosol	47.3	39.55
Os09t0273800-01	Rice	cytosol	44.59	39.52
TraesCS2A01G522300.1	Wheat	cytosol	46.62	39.2
TraesCS5D01G105800.1	Wheat	cytosol	38.51	39.04
HORVU5Hr1G110760.2	Barley	cytosol	41.89	38.99
HORVU5Hr1G110790.1	Barley	cytosol	27.03	38.84
TraesCS5A01G093500.1	Wheat	cytosol	43.24	38.79
HORVU5Hr1G090360.1	Barley	cytosol	46.62	38.76
HORVU7Hr1G099950.1	Barley	cytosol	45.27	38.73
Os06t0113800-00	Rice	cytosol	43.24	38.55
HORVU2Hr1G115400.1	Barley	cytosol	45.95	38.42
HORVU2Hr1G115420.1	Barley	cytosol	45.95	38.42
PGSC0003DMT400093419	Potato	cytosol	39.19	38.41
PGSC0003DMT400097239	Potato	cytosol	39.19	38.41
HORVU7Hr1G099860.2	Barley	cytosol, mitochondrion, nucleus	45.27	38.29
TraesCS5B01G099600.1	Wheat	cytosol	45.27	38.29
PGSC0003DMT400087694	Potato	cytosol	38.51	38.0
Solyc11g008230.1.1	Tomato	cytosol	40.54	37.97
TraesCS4B01G337400.1	Wheat	cytosol	40.54	37.97
HORVU2Hr1G115380.1	Barley	cytosol	45.95	37.78
PGSC0003DMT400088220	Potato	cytosol	38.51	37.75
EER99267	Sorghum	cytosol	43.92	37.57
HORVU3Hr1G089860.3	Barley	cytosol	45.27	37.22
TraesCS5B01G165700.1	Wheat	cytosol	43.92	37.14
TraesCS2D01G524400.1	Wheat	cytosol	40.54	37.04
VIT_19s0085g00190.t01	Wine grape	cytosol	39.19	36.94
TraesCS7B01G492200.1	Wheat	cytosol	43.92	36.93
TraesCS7B01G492300.1	Wheat	cytosol	43.92	36.93
TraesCS5D01G379900.1	Wheat	cytosol	36.49	36.73
PGSC0003DMT400085417	Potato	cytosol	31.08	36.51
VIT_15s0045g00490.t01	Wine grape	cytosol	37.16	36.42
TraesCS7A01G565800.1	Wheat	cytosol	43.24	36.36
TraesCS7B01G492500.1	Wheat	cytosol	43.24	36.36
PGSC0003DMT400096238	Potato	cytosol	36.49	36.24
HORVU7Hr1G103140.2	Barley	cytosol	43.92	36.11
TraesCS5D01G173200.1	Wheat	cytosol	43.92	36.11
TraesCS6B01G008800.1	Wheat	cytosol	42.57	36.0
TraesCS6D01G002600.1	Wheat	cytosol	42.57	36.0
TraesCS6A01G016900.1	Wheat	cytosol	43.24	35.96
TraesCS5B01G372700.1	Wheat	cytosol	39.19	35.8
TraesCS7B01G492400.1	Wheat	cytosol	42.57	35.8
PGSC0003DMT400086770	Potato	cytosol	30.41	35.71
TraesCS5A01G168900.1	Wheat	cytosol	43.92	35.71
TraesCS7D01G545000.2	Wheat	cytosol	41.22	35.67
PGSC0003DMT400090072	Potato	cytosol	24.32	35.29
PGSC0003DMT400093338	Potato	cytosol	39.86	35.12
TraesCS3D01G077800.1	Wheat	cytosol	39.86	35.12
TraesCS6B01G024700.1	Wheat	cytosol	39.86	35.12
Zm00001d022618_P001	Maize	cytosol	40.54	35.09
TraesCS7D01G544900.1	Wheat	cytosol	33.78	34.97
TraesCS3B01G092200.1	Wheat	cytosol	39.19	34.94
Zm00001d007590_P001	Maize	cytosol	43.92	34.57
TraesCS7A01G565700.1	Wheat	cytosol	39.86	34.5
GSMUA_Achr3P26800_001	Banana	cytosol	37.16	34.38
PGSC0003DMT400095953	Potato	cytosol	36.49	34.18
GSMUA_Achr8P33930_001	Banana	cytosol	48.65	34.12
VIT_10s0003g05820.t01	Wine grape	cytosol	37.16	33.95
TraesCS2A01G574500.1	Wheat	cytosol	38.51	33.93
PGSC0003DMT400088079	Potato	cytosol	26.35	33.91
PGSC0003DMT400089461	Potato	cytosol	29.05	33.86
Os09t0275200-01	Rice	cytosol	36.49	33.75
PGSC0003DMT400091657	Potato	cytosol	35.81	33.54
HORVU5Hr1G092210.1	Barley	cytosol	36.49	33.54
Zm00001d007589_P001	Maize	cytosol	43.92	33.51
HORVU7Hr1G002220.1	Barley	cytosol, plastid	47.3	33.33
Zm00001d007586_P001	Maize	cytosol	43.24	33.33
TraesCS3A01G374400.1	Wheat	cytosol	36.49	33.13
PGSC0003DMT400085217	Potato	cytosol	29.05	33.08
OQU76826	Sorghum	cytosol	38.51	32.95
TraesCS4A01G379700.1	Wheat	cytosol	33.11	32.89
Zm00001d007659_P001	Maize	cytosol	42.57	32.81
Os07t0625600-00	Rice	cytosol	39.19	32.58
Os09t0274800-00	Rice	cytosol	37.84	32.56
TraesCS5D01G176900.1	Wheat	cytosol	42.57	32.14
TraesCS6A01G017300.1	Wheat	cytosol	33.78	32.05
TraesCS6D01G020500.1	Wheat	cytosol	33.78	32.05
TraesCS1D01G201900.1	Wheat	cytosol	35.81	31.93
TraesCS3B01G406500.1	Wheat	cytosol	35.14	31.9
PGSC0003DMT400019185	Potato	cytosol	37.84	31.11
Solyc11g008240.1.1	Tomato	cytosol	33.11	31.01
Solyc11g008400.1.1	Tomato	cytosol	37.16	30.56
TraesCS5B01G169700.1	Wheat	cytosol	41.22	30.5
TraesCS5A01G172300.1	Wheat	cytosol	40.54	30.46
Solyc03g093190.1.1	Tomato	cytosol	25.0	30.33
Os07t0625500-01	Rice	cytosol	34.46	29.31
HORVU7Hr1G099790.1	Barley	cytosol, plastid	37.84	28.43
PGSC0003DMT400096074	Potato	cytosol	32.43	27.91
Os07t0624900-00	Rice	cytosol	36.49	27.0
Os02t0101600-00	Rice	cytosol	29.05	26.71
KRH13748	Soybean	cytosol	32.43	26.23
PGSC0003DMT400019237	Potato	cytosol	33.11	25.93
Zm00001d042677_P001	Maize	plastid	45.95	25.76
TraesCS1B01G156000.1	Wheat	cytosol	38.51	24.15
TraesCS1D01G138400.1	Wheat	cytosol	37.84	23.53
TraesCS1A01G129800.1	Wheat	cytosol	37.16	23.31
Solyc11g008420.1.1	Tomato	cytosol	29.73	23.28
Os10t0438100-00	Rice	cytosol	34.46	23.18
HORVU1Hr1G035930.1	Barley	cytosol	37.16	22.73
EER94185	Sorghum	cytosol	29.73	20.85
OQU90298	Sorghum	cytosol	33.78	14.33
HORVU3Hr1G074970.1	Barley	cytosol, nucleus	23.65	13.89
TraesCS3B01G340200.1	Wheat	cytosol	29.73	10.55
TraesCS3D01G305500.1	Wheat	cytosol	31.76	9.2
TraesCS3A01G297000.1	Wheat	cytosol	32.43	9.06
TraesCS3B01G340100.1	Wheat	nucleus	31.76	9.04

Protein Annotations

MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr4G25740_001	EnsemblPlants:GSMUA_Achr4P25740_001	EnsemblPlants:GSMUA_Achr4T25740_001	UniProt:M0SS35
PFAM:PF01466	PFAM:PF03931	PIRSF:PIRSF028729	PANTHER:PTHR11165	PANTHER:PTHR11165:SF89	InterPro:SKP1
InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf	SMART:SM00512	SUPFAM:SSF54695	SUPFAM:SSF81382
InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	UniParc:UPI0002962FD9	:	:	:

Description

Putative SKP1-like protein 3 [Source:GMGC_GENE;Acc:GSMUA_Achr4G25740_001]

Coordinates

chr4:+:25147132..25147671

Molecular Weight (calculated)

17146.4 Da

IEP (calculated)

4.481

GRAVY (calculated)

-0.513

Length

148 amino acids

Sequence
(BLAST)

001: MIALRSSDGQ EFRLEMEACI MSEILTFVFD DCGTEREVTL PNVNGKTMKK VIEYLKKHTE STSKGPDDDE LKAWDDEFMQ VDTNTLHDLL KASNYLIIQD
101: LLDLCVKTTA ELMRGKRVED IREIFNIKSD FTKEEEAEIG KANRWAFR

Best Arabidopsis Sequence Match ( AT2G25700.1 )
(BLAST)

001: MAETKKMIIL KSSDGESFEV EEAVAVESQT IKHMIEDDCV DNGIPLPNVT GAILAKVIEY CKKHVEAAAE AGGDKDFYGS TENHELKTWD NDFVKVDHPT
101: LFDLLRAANY LNISGLLDLT CKAVADQMRG KTPAQMREHF NIKNDYTPEE EAEVRNENRW AFE

Arabidopsis Description

ASK3SKP1-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL93]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.