Factsheet for PGSC0003DMT400088079

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400086770	Potato	cytosol	87.83	80.16
PGSC0003DMT400085217	Potato	cytosol	89.57	79.23
PGSC0003DMT400085417	Potato	cytosol	85.22	77.78
PGSC0003DMT400038385	Potato	cytosol	94.78	72.19
PGSC0003DMT400093573	Potato	cytosol	93.04	70.86
PGSC0003DMT400087694	Potato	cytosol	92.17	70.67
PGSC0003DMT400090609	Potato	cytosol	91.3	69.54
PGSC0003DMT400088820	Potato	cytosol	90.43	68.87
PGSC0003DMT400093419	Potato	cytosol	89.57	68.21
PGSC0003DMT400088220	Potato	cytosol	87.83	66.89
PGSC0003DMT400097239	Potato	cytosol	85.22	64.9
PGSC0003DMT400088621	Potato	cytosol	62.61	61.54
Solyc03g093190.1.1	Tomato	cytosol	64.35	60.66
PGSC0003DMT400096238	Potato	cytosol	66.96	51.68
PGSC0003DMT400090072	Potato	cytosol	39.13	44.12
PGSC0003DMT400093338	Potato	cytosol	64.35	44.05
HORVU5Hr1G110790.1	Barley	cytosol	38.26	42.72
PGSC0003DMT400068727	Potato	cytosol	51.3	39.33
PGSC0003DMT400094745	Potato	cytosol	35.65	39.05
TraesCS4A01G366400.1	Wheat	cytosol	55.65	39.02
TraesCS2D01G560500.1	Wheat	cytosol	54.78	38.41
PGSC0003DMT400024783	Potato	cytosol	49.57	38.0
TraesCS2D01G560400.1	Wheat	cytosol	53.91	37.8
TraesCS2D01G560700.1	Wheat	cytosol	53.91	37.8
TraesCS5B01G474100.1	Wheat	cytosol	53.04	37.65
PGSC0003DMT400068726	Potato	cytosol	48.7	37.33
TraesCS2D01G560300.1	Wheat	cytosol	53.04	37.2
HORVU5Hr1G110810.1	Barley	cytosol	49.57	37.01
TraesCS6D01G045500.1	Wheat	cytosol	53.91	36.69
TraesCS5D01G475600.1	Wheat	cytosol	55.65	36.57
PGSC0003DMT400015825	Potato	cytosol	49.57	36.54
PGSC0003DMT400068720	Potato	cytosol	46.96	36.24
TraesCS2B01G590600.1	Wheat	cytosol	54.78	36.21
TraesCS3B01G308600.1	Wheat	cytosol	51.3	36.2
TraesCS6A01G000300.1	Wheat	cytosol	51.3	36.2
TraesCS6B01G004300.1	Wheat	cytosol	51.3	36.2
TraesCS7D01G016900.1	Wheat	cytosol	53.04	36.09
TraesCS2D01G420100.1	Wheat	cytosol	54.78	36.0
TraesCS7D01G194900.1	Wheat	cytosol	54.78	36.0
OQU87046	Sorghum	cytosol	41.74	35.82
TraesCS3B01G566400.1	Wheat	cytosol	44.35	35.66
TraesCS4A01G472600.1	Wheat	cytosol	53.04	35.47
TraesCS7A01G020600.1	Wheat	cytosol	53.04	35.47
TraesCS5D01G475400.1	Wheat	golgi, plastid, unclear	53.91	35.43
TraesCS7B01G098900.1	Wheat	cytosol	53.91	35.43
TraesCS5A01G462800.1	Wheat	cytosol	40.87	35.07
TraesCS3D01G509600.1	Wheat	cytosol	52.17	34.88
Os11t0456300-01	Rice	plasma membrane	52.17	34.68
EES09697	Sorghum	cytosol	53.04	34.66
Zm00001d049230_P001	Maize	mitochondrion	53.04	34.66
EES06093	Sorghum	cytosol	50.43	34.32
TraesCS6D01G001600.1	Wheat	cytosol	52.17	34.29
EES13900	Sorghum	cytosol	49.57	33.93
TraesCS6B01G053400.1	Wheat	cytosol	40.0	33.58
PGSC0003DMT400015827	Potato	cytosol	46.09	33.54
HORVU5Hr1G110840.1	Barley	cytosol	50.43	32.95
HORVU5Hr1G110800.1	Barley	cytosol	50.43	32.58
HORVU5Hr1G110820.2	Barley	cytosol	50.43	32.58
TraesCS2B01G442100.1	Wheat	mitochondrion	50.43	32.58
HORVU5Hr1G110830.3	Barley	cytosol	50.43	32.4
TraesCS4A01G379700.1	Wheat	cytosol	41.74	32.21
TraesCS7A01G498800.1	Wheat	cytosol	46.09	32.12
HORVU5Hr1G110760.2	Barley	cytosol	44.35	32.08
HORVU5Hr1G110850.1	Barley	cytosol	49.57	32.02
Os09t0539500-01	Rice	cytosol, plasma membrane, plastid	48.7	32.0
PGSC0003DMT400096074	Potato	cytosol	47.83	31.98
PGSC0003DMT400019185	Potato	cytosol	49.57	31.67
HORVU5Hr1G090360.1	Barley	cytosol	48.7	31.46
HORVU5Hr1G110720.2	Barley	cytosol	48.7	31.46
TraesCS2A01G522300.1	Wheat	cytosol	47.83	31.25
PGSC0003DMT400095953	Potato	cytosol	42.61	31.01
TraesCS2D01G524400.1	Wheat	cytosol	43.48	30.86
TraesCS6D01G020500.1	Wheat	cytosol	41.74	30.77
CDY03015	Canola	cytosol	40.0	30.46
HORVU2Hr1G115410.2	Barley	cytosol	44.35	30.36
TraesCS3A01G374400.1	Wheat	cytosol	42.61	30.06
EER99267	Sorghum	cytosol	45.22	30.06
HORVU7Hr1G099950.1	Barley	cytosol	45.22	30.06
VIT_15s0045g00490.t01	Wine grape	cytosol	39.13	29.8
TraesCS5B01G165700.1	Wheat	cytosol	45.22	29.71
TraesCS6D01G044400.1	Wheat	cytosol	34.78	29.63
Os08t0375500-00	Rice	cytosol	43.48	29.59
TraesCS6A01G017300.1	Wheat	cytosol	40.0	29.49
TraesCS3B01G406500.1	Wheat	cytosol	41.74	29.45
TraesCS7A01G193600.1	Wheat	cytosol	34.78	29.41
HORVU2Hr1G115400.1	Barley	cytosol	45.22	29.38
HORVU7Hr1G099860.2	Barley	cytosol, mitochondrion, nucleus	44.35	29.14
TraesCS6D01G002600.1	Wheat	cytosol	44.35	29.14
Os08t0375700-00	Rice	cytosol	42.61	28.99
HORVU2Hr1G115380.1	Barley	cytosol	45.22	28.89
TraesCS5D01G173200.1	Wheat	cytosol	45.22	28.89
HORVU2Hr1G115420.1	Barley	cytosol	44.35	28.81
HORVU7Hr1G002220.1	Barley	cytosol, plastid	52.17	28.57
TraesCS5A01G168900.1	Wheat	cytosol	45.22	28.57
Os09t0274800-00	Rice	cytosol	42.61	28.49
TraesCS4B01G337400.1	Wheat	cytosol	39.13	28.48
HORVU3Hr1G089860.3	Barley	cytosol	44.35	28.33
HORVU7Hr1G103140.2	Barley	cytosol	44.35	28.33
TraesCS7A01G565700.1	Wheat	cytosol	41.74	28.07
TraesCS7D01G545000.2	Wheat	cytosol	41.74	28.07
HORVU7Hr1G099840.1	Barley	cytosol	42.61	28.0
TraesCS6B01G024700.1	Wheat	cytosol	40.87	27.98
TraesCS5A01G093500.1	Wheat	cytosol	40.0	27.88
PGSC0003DMT400091657	Potato	cytosol	38.26	27.85
TraesCS7A01G565800.1	Wheat	cytosol	42.61	27.84
TraesCS7B01G492200.1	Wheat	cytosol	42.61	27.84
TraesCS7B01G492300.1	Wheat	cytosol	42.61	27.84
TraesCS7B01G492500.1	Wheat	cytosol	42.61	27.84
Zm00001d007590_P001	Maize	cytosol	45.22	27.66
TraesCS5B01G099600.1	Wheat	cytosol	41.74	27.43
TraesCS7B01G492400.1	Wheat	cytosol	41.74	27.27
Zm00001d007659_P001	Maize	cytosol	45.22	27.08
Os09t0273800-01	Rice	cytosol	39.13	26.95
Zm00001d007589_P001	Maize	cytosol	45.22	26.8
VIT_19s0085g00190.t01	Wine grape	cytosol	36.52	26.75
TraesCS5D01G105800.1	Wheat	cytosol	33.91	26.71
TraesCS7D01G544900.1	Wheat	cytosol	33.04	26.57
Zm00001d007586_P001	Maize	cytosol	44.35	26.56
VIT_10s0003g05820.t01	Wine grape	cytosol	37.39	26.54
TraesCS5D01G379900.1	Wheat	cytosol	33.91	26.53
TraesCS6A01G016900.1	Wheat	cytosol	40.87	26.4
HORVU7Hr1G099790.1	Barley	cytosol, plastid	45.22	26.4
GSMUA_Achr4P25740_001	Banana	cytosol	33.91	26.35
TraesCS6B01G008800.1	Wheat	cytosol	40.0	26.29
TraesCS2A01G574500.1	Wheat	cytosol	38.26	26.19
Os02t0101600-00	Rice	cytosol	36.52	26.09
TraesCS5D01G176900.1	Wheat	cytosol	44.35	26.02
TraesCS5A01G172300.1	Wheat	cytosol	44.35	25.89
Os07t0625600-00	Rice	cytosol	40.0	25.84
TraesCS5B01G169700.1	Wheat	cytosol	44.35	25.5
TraesCS3B01G092200.1	Wheat	cytosol	36.52	25.3
PGSC0003DMT400089461	Potato	cytosol	27.83	25.2
Os09t0412050-00	Rice	cytosol	36.52	25.0
VIT_19s0085g00180.t01	Wine grape	cytosol	33.04	25.0
Os07t0625500-01	Rice	cytosol	37.39	24.71
Zm00001d022618_P001	Maize	cytosol	36.52	24.56
TraesCS3D01G077800.1	Wheat	cytosol	35.65	24.4
Os06t0113800-00	Rice	cytosol	34.78	24.1
TraesCS1D01G201900.1	Wheat	cytosol	34.78	24.1
TraesCS5B01G372700.1	Wheat	cytosol	33.91	24.07
PGSC0003DMT400019237	Potato	cytosol	38.26	23.28
HORVU5Hr1G092210.1	Barley	cytosol	32.17	22.98
OQU76826	Sorghum	cytosol	33.91	22.54
GSMUA_Achr4P25750_001	Banana	cytosol	33.91	22.03
Os09t0275200-01	Rice	cytosol	30.43	21.88
KRH13748	Soybean	cytosol	33.04	20.77
Zm00001d042677_P001	Maize	plastid	46.96	20.45
Os07t0624900-00	Rice	cytosol	32.17	18.5
Os10t0438100-00	Rice	cytosol	34.78	18.18
HORVU3Hr1G074970.1	Barley	cytosol, nucleus	36.52	16.67
TraesCS1A01G129800.1	Wheat	cytosol	33.91	16.53
TraesCS1B01G156000.1	Wheat	cytosol	33.91	16.53
TraesCS1D01G138400.1	Wheat	cytosol	33.91	16.39
HORVU1Hr1G035930.1	Barley	cytosol	33.91	16.12
EER94185	Sorghum	cytosol	27.83	15.17
OQU90298	Sorghum	cytosol	39.13	12.89
TraesCS3B01G340200.1	Wheat	cytosol	34.78	9.59
TraesCS3D01G305500.1	Wheat	cytosol	35.65	8.02
TraesCS3A01G297000.1	Wheat	cytosol	36.52	7.92
TraesCS3B01G340100.1	Wheat	nucleus	32.17	7.12

Protein Annotations

EnsemblPlants:PGSC0003DMT400088079	EnsemblPlantsGene:PGSC0003DMG400037650	Gene3D:3.30.710.10	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf
InterPro:Skp1_comp_POZ	PANTHER:PTHR11165	PANTHER:PTHR11165:SF89	PFAM:PF03931	PGSC:PGSC0003DMG400037650	SMART:SM00512
SUPFAM:SSF54695	SUPFAM:SSF81382	UniParc:UPI000295BF4C	UniProt:M1DF69	MapMan:19.2.2.8.1.1	:

Description

SKP1 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400037650]

Coordinates

chr12:+:42683657..42684004

Molecular Weight (calculated)

13230.2 Da

IEP (calculated)

5.215

GRAVY (calculated)

-0.093

Length

115 amino acids

Sequence
(BLAST)

001: MSTKFLTLKT CDGKEFVLDE AIAVRSQTIK NMVEDDCVSN VIPLPNVDSK TMTKVIEYWK KHSEEDVSKD MLLEFEKAFV KVHHSILHAL ILAANFLNDK
101: EILDMMCQEV VDRIK

Best Arabidopsis Sequence Match ( AT1G75950.1 )
(BLAST)

001: MSAKKIVLKS SDGESFEVEE AVALESQTIA HMVEDDCVDN GVPLPNVTSK ILAKVIEYCK RHVEAAASKA EAVEGAATSD DDLKAWDADF MKIDQATLFE
101: LILAANYLNI KNLLDLTCQT VADMIKGKTP EEIRTTFNIK NDFTPEEEEE VRRENQWAFE

Arabidopsis Description

SKP1ASKP1-like protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q39255]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.