Factsheet for TraesCS2D01G560700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G560500.1	Wheat	cytosol	93.9	93.9
TraesCS2D01G560400.1	Wheat	cytosol	92.07	92.07
TraesCS2D01G560300.1	Wheat	cytosol	92.07	92.07
TraesCS5D01G475600.1	Wheat	cytosol	96.95	90.86
TraesCS6D01G045500.1	Wheat	cytosol	92.68	89.94
TraesCS2D01G420100.1	Wheat	cytosol	95.73	89.71
TraesCS6D01G044400.1	Wheat	cytosol	73.17	88.89
TraesCS5D01G475400.1	Wheat	golgi, plastid, unclear	94.51	88.57
TraesCS6B01G053400.1	Wheat	cytosol	73.78	88.32
TraesCS3B01G308600.1	Wheat	cytosol	86.59	87.12
TraesCS3D01G509600.1	Wheat	cytosol	90.85	86.63
TraesCS7D01G194900.1	Wheat	cytosol	90.85	85.14
TraesCS7D01G016900.1	Wheat	cytosol	84.15	81.66
TraesCS2B01G442100.1	Wheat	mitochondrion	87.8	80.9
TraesCS6D01G001600.1	Wheat	cytosol	85.98	80.57
HORVU5Hr1G110720.2	Barley	cytosol	87.2	80.34
HORVU5Hr1G110850.1	Barley	cytosol	86.59	79.78
TraesCS2D01G524400.1	Wheat	cytosol	74.39	75.31
TraesCS6D01G002600.1	Wheat	cytosol	69.51	65.14
TraesCS3D01G016600.1	Wheat	cytosol	63.41	63.03
TraesCS5D01G105800.1	Wheat	cytosol	56.1	63.01
TraesCS5D01G337100.1	Wheat	cytosol	63.41	62.65
TraesCS5D01G337000.1	Wheat	cytosol	63.41	62.65
TraesCS7D01G545000.2	Wheat	cytosol	65.24	62.57
PGSC0003DMT400088621	Potato	cytosol	44.51	62.39
TraesCS5D01G173200.1	Wheat	cytosol	68.29	62.22
Solyc03g112710.1.1	Tomato	cytosol	56.71	61.59
TraesCS7D01G544900.1	Wheat	cytosol	53.66	61.54
PGSC0003DMT400038385	Potato	cytosol	56.1	60.93
PGSC0003DMT400093573	Potato	cytosol	54.88	59.6
PGSC0003DMT400090609	Potato	cytosol	54.88	59.6
PGSC0003DMT400088820	Potato	cytosol	54.27	58.94
PGSC0003DMT400088220	Potato	cytosol	53.05	57.62
PGSC0003DMT400093419	Potato	cytosol	53.05	57.62
CDY03015	Canola	cytosol	53.05	57.62
PGSC0003DMT400085217	Potato	cytosol	44.51	56.15
PGSC0003DMT400087694	Potato	cytosol	51.22	56.0
PGSC0003DMT400097239	Potato	cytosol	51.22	55.63
TraesCS6D01G020500.1	Wheat	cytosol	52.44	55.13
TraesCS5D01G176900.1	Wheat	cytosol	65.24	54.59
PGSC0003DMT400088079	Potato	cytosol	37.8	53.91
VIT_19s0085g00180.t01	Wine grape	cytosol	48.78	52.63
PGSC0003DMT400086770	Potato	cytosol	40.24	52.38
PGSC0003DMT400096238	Potato	cytosol	46.34	51.01
PGSC0003DMT400085417	Potato	cytosol	39.02	50.79
TraesCS5D01G337200.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	74.39	49.39
Solyc11g008230.1.1	Tomato	cytosol	47.56	49.37
PGSC0003DMT400090072	Potato	cytosol	30.49	49.02
VIT_15s0045g00490.t01	Wine grape	cytosol	45.12	49.01
GSMUA_Achr4P25740_001	Banana	cytosol	43.9	48.65
TraesCS5D01G379900.1	Wheat	cytosol	43.29	48.3
TraesCS1D01G201900.1	Wheat	cytosol	48.17	47.59
Solyc03g093190.1.1	Tomato	cytosol	35.37	47.54
VIT_10s0003g05820.t01	Wine grape	cytosol	46.95	47.53
TraesCS3D01G077800.1	Wheat	cytosol	48.17	47.02
PGSC0003DMT400093338	Potato	cytosol	48.17	47.02
VIT_19s0085g00190.t01	Wine grape	cytosol	43.9	45.86
PGSC0003DMT400095953	Potato	cytosol	43.9	45.57
PGSC0003DMT400091657	Potato	cytosol	43.9	45.57
PGSC0003DMT400019185	Potato	cytosol	49.39	45.0
Solyc11g008400.1.1	Tomato	cytosol	48.78	44.44
GSMUA_Achr4P25750_001	Banana	cytosol	46.95	43.5
PGSC0003DMT400089461	Potato	cytosol	33.54	43.31
Solyc11g008240.1.1	Tomato	cytosol	40.24	41.77
KRH13748	Soybean	cytosol	46.34	41.53
PGSC0003DMT400096074	Potato	cytosol	40.24	38.37
PGSC0003DMT400019237	Potato	cytosol	43.29	37.57
Solyc11g008420.1.1	Tomato	cytosol	40.85	35.45
TraesCS1D01G138400.1	Wheat	cytosol	48.17	33.19
TraesCS3D01G305500.1	Wheat	cytosol	47.56	15.26

Protein Annotations

MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019538	PFAM:PF01466	PFAM:PF03931	PIRSF:PIRSF028729	PANTHER:PTHR11165
PANTHER:PTHR11165:SF89	InterPro:SKP1	InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf	SMART:SM00512
SUPFAM:SSF54695	SUPFAM:SSF81382	InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	EnsemblPlantsGene:TraesCS2D01G560700	EnsemblPlants:TraesCS2D01G560700.1

Description

No Description!

Coordinates

chr2D:+:633297802..633298296

Molecular Weight (calculated)

18317.6 Da

IEP (calculated)

4.271

GRAVY (calculated)

-0.407

Length

164 amino acids

Sequence
(BLAST)

001: MAAEEGEKKM ITLKSSDGEE FQVEVAVAME SQTIRHMIED DCADNGIPLP NVDSKILSKV IEYCKKHAPK PADSSDFTAA AAPAEDLKSF DAEFVKVDQA
101: TLFDLILAAN YLNIKGLLDL TCQTVADMIK GKTPEEIRKT FNIKNDFTPE EEAEIRRENQ WAFE

Best Arabidopsis Sequence Match ( AT1G75950.1 )
(BLAST)

001: MSAKKIVLKS SDGESFEVEE AVALESQTIA HMVEDDCVDN GVPLPNVTSK ILAKVIEYCK RHVEAAASKA EAVEGAATSD DDLKAWDADF MKIDQATLFE
101: LILAANYLNI KNLLDLTCQT VADMIKGKTP EEIRTTFNIK NDFTPEEEEE VRRENQWAFE

Arabidopsis Description

SKP1ASKP1-like protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q39255]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.