Factsheet for TraesCS5D01G475400.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, unclear, plastid

Predictor Summary:

cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid, unclear
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

plastid: 16595579
golgi: 25769308
unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G560500.1	Wheat	cytosol	90.86	96.95
TraesCS5D01G475600.1	Wheat	cytosol	96.0	96.0
TraesCS2D01G560300.1	Wheat	cytosol	89.14	95.12
TraesCS2D01G420100.1	Wheat	cytosol	94.86	94.86
TraesCS2D01G560400.1	Wheat	cytosol	88.57	94.51
TraesCS2D01G560700.1	Wheat	cytosol	88.57	94.51
TraesCS6D01G045500.1	Wheat	cytosol	89.71	92.9
TraesCS6D01G044400.1	Wheat	cytosol	71.43	92.59
TraesCS2B01G590600.1	Wheat	cytosol	92.0	92.53
TraesCS3D01G509600.1	Wheat	cytosol	90.29	91.86
TraesCS7D01G194900.1	Wheat	cytosol	89.14	89.14
HORVU5Hr1G110850.1	Barley	cytosol	85.71	84.27
HORVU5Hr1G110720.2	Barley	cytosol	85.14	83.71
TraesCS7D01G016900.1	Wheat	cytosol	80.57	83.43
TraesCS6D01G001600.1	Wheat	cytosol	82.86	82.86
TraesCS2D01G524400.1	Wheat	cytosol	74.29	80.25
TraesCS6D01G002600.1	Wheat	cytosol	68.0	68.0
TraesCS7D01G545000.2	Wheat	cytosol	65.14	66.67
TraesCS3D01G016600.1	Wheat	cytosol	62.86	66.67
TraesCS5D01G105800.1	Wheat	cytosol	55.43	66.44
TraesCS7D01G544900.1	Wheat	cytosol	53.14	65.03
TraesCS5D01G337100.1	Wheat	cytosol	61.14	64.46
TraesCS5D01G337000.1	Wheat	cytosol	60.57	63.86
TraesCS5D01G173200.1	Wheat	cytosol	65.14	63.33
Solyc03g112710.1.1	Tomato	cytosol	53.14	61.59
PGSC0003DMT400088621	Potato	cytosol	41.14	61.54
PGSC0003DMT400038385	Potato	cytosol	52.57	60.93
PGSC0003DMT400093573	Potato	cytosol	51.43	59.6
PGSC0003DMT400090609	Potato	cytosol	51.43	59.6
CDY03015	Canola	cytosol	50.86	58.94
PGSC0003DMT400088820	Potato	cytosol	50.86	58.94
TraesCS6D01G020500.1	Wheat	cytosol	51.43	57.69
PGSC0003DMT400088220	Potato	cytosol	49.71	57.62
PGSC0003DMT400093419	Potato	cytosol	49.71	57.62
PGSC0003DMT400085217	Potato	cytosol	41.71	56.15
PGSC0003DMT400087694	Potato	cytosol	48.0	56.0
PGSC0003DMT400097239	Potato	cytosol	48.0	55.63
TraesCS5D01G176900.1	Wheat	cytosol	61.14	54.59
PGSC0003DMT400088079	Potato	cytosol	35.43	53.91
VIT_19s0085g00180.t01	Wine grape	cytosol	45.71	52.63
PGSC0003DMT400086770	Potato	cytosol	37.71	52.38
PGSC0003DMT400096238	Potato	cytosol	43.43	51.01
PGSC0003DMT400090072	Potato	cytosol	29.71	50.98
PGSC0003DMT400085417	Potato	cytosol	36.57	50.79
Solyc11g008230.1.1	Tomato	cytosol	45.71	50.63
GSMUA_Achr4P25740_001	Banana	cytosol	42.29	50.0
TraesCS5D01G337200.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	69.14	48.99
VIT_15s0045g00490.t01	Wine grape	cytosol	41.71	48.34
TraesCS5D01G379900.1	Wheat	cytosol	40.57	48.3
VIT_10s0003g05820.t01	Wine grape	cytosol	44.57	48.15
TraesCS1D01G201900.1	Wheat	cytosol	45.14	47.59
TraesCS3D01G077800.1	Wheat	cytosol	45.14	47.02
PGSC0003DMT400093338	Potato	cytosol	45.14	47.02
PGSC0003DMT400095953	Potato	cytosol	42.29	46.84
PGSC0003DMT400091657	Potato	cytosol	42.29	46.84
Solyc03g093190.1.1	Tomato	cytosol	32.57	46.72
VIT_19s0085g00190.t01	Wine grape	cytosol	41.14	45.86
GSMUA_Achr4P25750_001	Banana	cytosol	46.29	45.76
PGSC0003DMT400019185	Potato	cytosol	46.29	45.0
Solyc11g008400.1.1	Tomato	cytosol	45.71	44.44
PGSC0003DMT400089461	Potato	cytosol	31.43	43.31
Solyc11g008240.1.1	Tomato	cytosol	38.29	42.41
KRH13748	Soybean	cytosol	42.86	40.98
PGSC0003DMT400096074	Potato	cytosol	37.71	38.37
PGSC0003DMT400019237	Potato	cytosol	39.43	36.51
TraesCS1D01G138400.1	Wheat	cytosol	46.86	34.45
Solyc11g008420.1.1	Tomato	cytosol	37.14	34.39
TraesCS3D01G305500.1	Wheat	cytosol	44.57	15.26

Protein Annotations

MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019538	PFAM:PF01466	PFAM:PF03931	PIRSF:PIRSF028729	PANTHER:PTHR11165
PANTHER:PTHR11165:SF89	InterPro:SKP1	InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf	SMART:SM00512
SUPFAM:SSF54695	SUPFAM:SSF81382	InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	EnsemblPlantsGene:TraesCS5D01G475400	EnsemblPlants:TraesCS5D01G475400.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr5D:-:515039043..515039753

Molecular Weight (calculated)

19320.7 Da

IEP (calculated)

4.277

GRAVY (calculated)

-0.418

Length

175 amino acids

Sequence
(BLAST)

001: MAAEEGEKKM ITLKSSDGEE FQVEEAVAME SQTIRHMIED DCADNGIPLP NVDSKILSKV IEYCKKHVQA SPKPANSGAA VDASSSTSTA VAASAEDLKS
101: FDAEFIKVDQ NTLFDLILAA NYLNIKGLLD LTCQTVADMI KGKTPEEIRK TFNIKNDFTP EEEAEIRREN QWAFE

Best Arabidopsis Sequence Match ( AT5G42190.1 )
(BLAST)

001: MSTVRKITLK SSDGENFEID EAVALESQTI KHMIEDDCTD NGIPLPNVTS KILSKVIEYC KRHVEAAEKS ETTADAAAAT TTTTVASGSS DEDLKTWDSE
101: FIKVDQGTLF DLILAANYLN IKGLLDLTCQ TVADMIKGKT PEEIRKTFNI KNDFTPEEEE EVRRENQWAF E

Arabidopsis Description

SKP1BSKP1-like protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9FHW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.