Factsheet for PGSC0003DMT400095953

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400091657	Potato	cytosol	88.61	88.61
PGSC0003DMT400090072	Potato	cytosol	56.33	87.25
PGSC0003DMT400089461	Potato	cytosol	68.35	85.04
Solyc11g008240.1.1	Tomato	cytosol	77.85	77.85
PGSC0003DMT400024783	Potato	cytosol	46.2	48.67
PGSC0003DMT400068727	Potato	cytosol	45.57	48.0
PGSC0003DMT400019237	Potato	cytosol	56.33	47.09
PGSC0003DMT400015825	Potato	cytosol	46.2	46.79
PGSC0003DMT400038385	Potato	cytosol	43.67	45.7
EER99267	Sorghum	cytosol	50.0	45.66
PGSC0003DMT400068720	Potato	cytosol	43.04	45.64
TraesCS6A01G000300.1	Wheat	cytosol	46.84	45.4
TraesCS6B01G004300.1	Wheat	cytosol	46.84	45.4
PGSC0003DMT400068726	Potato	cytosol	43.04	45.33
PGSC0003DMT400087694	Potato	cytosol	43.04	45.33
TraesCS2D01G560400.1	Wheat	cytosol	46.84	45.12
PGSC0003DMT400093573	Potato	cytosol	43.04	45.03
OQU87046	Sorghum	cytosol	37.97	44.78
TraesCS2D01G560300.1	Wheat	cytosol	46.2	44.51
TraesCS2D01G560500.1	Wheat	cytosol	46.2	44.51
Os11t0456300-01	Rice	plasma membrane	48.73	44.51
TraesCS7D01G016900.1	Wheat	cytosol	47.47	44.38
PGSC0003DMT400015827	Potato	cytosol	44.3	44.3
HORVU5Hr1G110810.1	Barley	cytosol	43.04	44.16
EES13900	Sorghum	cytosol	46.84	44.05
TraesCS6D01G001600.1	Wheat	cytosol	48.73	44.0
TraesCS7B01G098900.1	Wheat	cytosol	48.73	44.0
TraesCS2D01G560700.1	Wheat	cytosol	45.57	43.9
TraesCS4A01G366400.1	Wheat	cytosol	45.57	43.9
PGSC0003DMT400085217	Potato	cytosol	36.08	43.85
PGSC0003DMT400088820	Potato	cytosol	41.77	43.71
PGSC0003DMT400090609	Potato	cytosol	41.77	43.71
TraesCS4A01G472600.1	Wheat	cytosol	47.47	43.6
TraesCS7A01G020600.1	Wheat	cytosol	47.47	43.6
TraesCS7D01G194900.1	Wheat	cytosol	48.1	43.43
EES06093	Sorghum	cytosol	46.2	43.2
EES09697	Sorghum	cytosol	48.1	43.18
Zm00001d049230_P001	Maize	mitochondrion	48.1	43.18
TraesCS6D01G044400.1	Wheat	cytosol	36.71	42.96
TraesCS3B01G308600.1	Wheat	cytosol	44.3	42.94
TraesCS2D01G420100.1	Wheat	cytosol	47.47	42.86
PGSC0003DMT400088079	Potato	cytosol	31.01	42.61
TraesCS6D01G045500.1	Wheat	cytosol	45.57	42.6
TraesCS5B01G474100.1	Wheat	cytosol	43.67	42.59
TraesCS5D01G475400.1	Wheat	golgi, plastid, unclear	46.84	42.29
TraesCS5D01G475600.1	Wheat	cytosol	46.84	42.29
HORVU5Hr1G110800.1	Barley	cytosol	47.47	42.13
HORVU5Hr1G110820.2	Barley	cytosol	47.47	42.13
TraesCS2B01G590600.1	Wheat	cytosol	46.2	41.95
HORVU5Hr1G110830.3	Barley	cytosol	47.47	41.9
TraesCS3D01G509600.1	Wheat	cytosol	45.57	41.86
PGSC0003DMT400019185	Potato	cytosol	47.47	41.67
VIT_19s0085g00180.t01	Wine grape	cytosol	39.87	41.45
TraesCS3B01G566400.1	Wheat	cytosol	37.34	41.26
PGSC0003DMT400093419	Potato	cytosol	39.24	41.06
TraesCS2B01G442100.1	Wheat	mitochondrion	46.2	41.01
HORVU5Hr1G110840.1	Barley	cytosol	45.57	40.91
TraesCS2A01G522300.1	Wheat	cytosol	45.57	40.91
HORVU5Hr1G110790.1	Barley	cytosol	26.58	40.78
HORVU5Hr1G110720.2	Barley	cytosol	45.57	40.45
HORVU5Hr1G110850.1	Barley	cytosol	45.57	40.45
CDY03015	Canola	cytosol	38.61	40.4
PGSC0003DMT400088220	Potato	cytosol	38.61	40.4
PGSC0003DMT400097239	Potato	cytosol	38.61	40.4
TraesCS5A01G462800.1	Wheat	cytosol	34.18	40.3
HORVU5Hr1G110760.2	Barley	cytosol	40.51	40.25
Os08t0375500-00	Rice	cytosol	43.04	40.24
Os08t0375700-00	Rice	cytosol	43.04	40.24
TraesCS2D01G524400.1	Wheat	cytosol	41.14	40.12
Os09t0539500-01	Rice	cytosol, plasma membrane, plastid	44.3	40.0
TraesCS6D01G002600.1	Wheat	cytosol	44.3	40.0
HORVU5Hr1G090360.1	Barley	cytosol	44.94	39.89
TraesCS6B01G024700.1	Wheat	cytosol	42.41	39.88
HORVU7Hr1G099840.1	Barley	cytosol	43.67	39.43
TraesCS5B01G099600.1	Wheat	cytosol	43.67	39.43
TraesCS6B01G053400.1	Wheat	cytosol	34.18	39.42
PGSC0003DMT400088621	Potato	cytosol	29.11	39.32
HORVU7Hr1G099950.1	Barley	cytosol	43.04	39.31
HORVU2Hr1G115410.2	Barley	cytosol	41.77	39.29
TraesCS7A01G193600.1	Wheat	cytosol	33.54	38.97
Os09t0273800-01	Rice	cytosol	41.14	38.92
HORVU2Hr1G115380.1	Barley	cytosol	44.3	38.89
VIT_10s0003g05820.t01	Wine grape	cytosol	39.87	38.89
TraesCS5A01G093500.1	Wheat	cytosol	40.51	38.79
HORVU2Hr1G115400.1	Barley	cytosol	43.04	38.42
TraesCS5D01G105800.1	Wheat	cytosol	35.44	38.36
HORVU7Hr1G099860.2	Barley	cytosol, mitochondrion, nucleus	42.41	38.29
TraesCS7A01G498800.1	Wheat	cytosol	39.87	38.18
PGSC0003DMT400086770	Potato	cytosol	30.38	38.1
TraesCS7B01G492200.1	Wheat	cytosol	42.41	38.07
HORVU2Hr1G115420.1	Barley	cytosol	42.41	37.85
Os09t0274800-00	Rice	cytosol	41.14	37.79
HORVU3Hr1G089860.3	Barley	cytosol	43.04	37.78
TraesCS5B01G165700.1	Wheat	cytosol	41.77	37.71
TraesCS6B01G008800.1	Wheat	cytosol	41.77	37.71
TraesCS7B01G492300.1	Wheat	cytosol	41.77	37.5
Zm00001d022618_P001	Maize	cytosol	40.51	37.43
Zm00001d007590_P001	Maize	cytosol	44.3	37.23
HORVU7Hr1G103140.2	Barley	cytosol	42.41	37.22
VIT_15s0045g00490.t01	Wine grape	cytosol	35.44	37.09
TraesCS7A01G565800.1	Wheat	cytosol	41.14	36.93
TraesCS7B01G492500.1	Wheat	cytosol	41.14	36.93
Os06t0113800-00	Rice	cytosol	38.61	36.75
TraesCS4B01G337400.1	Wheat	cytosol	36.71	36.71
Zm00001d007589_P001	Maize	cytosol	44.94	36.6
TraesCS6D01G020500.1	Wheat	cytosol	36.08	36.54
TraesCS6A01G016900.1	Wheat	cytosol	41.14	36.52
PGSC0003DMT400085417	Potato	cytosol	29.11	36.51
GSMUA_Achr4P25740_001	Banana	cytosol	34.18	36.49
Zm00001d007586_P001	Maize	cytosol	44.3	36.46
Zm00001d007659_P001	Maize	cytosol	44.3	36.46
Os09t0412050-00	Rice	cytosol	38.61	36.31
TraesCS7A01G565700.1	Wheat	cytosol	39.24	36.26
TraesCS7D01G545000.2	Wheat	cytosol	39.24	36.26
PGSC0003DMT400096238	Potato	cytosol	34.18	36.24
TraesCS1D01G201900.1	Wheat	cytosol	37.97	36.14
TraesCS3B01G092200.1	Wheat	cytosol	37.97	36.14
TraesCS5D01G173200.1	Wheat	cytosol	41.14	36.11
TraesCS6A01G017300.1	Wheat	cytosol	35.44	35.9
TraesCS5B01G372700.1	Wheat	cytosol	36.71	35.8
TraesCS3D01G077800.1	Wheat	cytosol	37.97	35.71
TraesCS5A01G168900.1	Wheat	cytosol	41.14	35.71
TraesCS3A01G374400.1	Wheat	cytosol	36.71	35.58
TraesCS5D01G379900.1	Wheat	cytosol	32.91	35.37
OQU76826	Sorghum	cytosol	38.61	35.26
TraesCS7B01G492400.1	Wheat	cytosol	39.24	35.23
PGSC0003DMT400093338	Potato	cytosol	37.34	35.12
KRH13748	Soybean	cytosol	40.51	34.97
HORVU7Hr1G002220.1	Barley	cytosol, plastid	46.2	34.76
TraesCS2A01G574500.1	Wheat	cytosol	36.71	34.52
PGSC0003DMT400094745	Potato	cytosol	22.78	34.29
Os07t0625600-00	Rice	cytosol	38.61	34.27
TraesCS4A01G379700.1	Wheat	cytosol	32.28	34.23
TraesCS5D01G176900.1	Wheat	cytosol	42.41	34.18
HORVU5Hr1G092210.1	Barley	cytosol	34.81	34.16
TraesCS5B01G169700.1	Wheat	cytosol	43.04	34.0
Os09t0275200-01	Rice	cytosol	34.18	33.75
TraesCS3B01G406500.1	Wheat	cytosol	34.81	33.74
TraesCS5A01G172300.1	Wheat	cytosol	41.77	33.5
VIT_19s0085g00190.t01	Wine grape	cytosol	32.91	33.12
TraesCS7D01G544900.1	Wheat	cytosol	29.75	32.87
GSMUA_Achr4P25750_001	Banana	cytosol	36.71	32.77
Os07t0625500-01	Rice	cytosol	35.44	32.18
PGSC0003DMT400096074	Potato	cytosol	31.65	29.07
Os07t0624900-00	Rice	cytosol	36.71	29.0
HORVU7Hr1G099790.1	Barley	cytosol, plastid	34.18	27.41
Zm00001d042677_P001	Maize	plastid	45.57	27.27
Os10t0438100-00	Rice	cytosol	37.34	26.82
TraesCS1B01G156000.1	Wheat	cytosol	37.34	25.0
TraesCS1A01G129800.1	Wheat	cytosol	36.71	24.58
TraesCS1D01G138400.1	Wheat	cytosol	36.71	24.37
Os02t0101600-00	Rice	cytosol	24.68	24.22
HORVU1Hr1G035930.1	Barley	cytosol	36.08	23.55
EER94185	Sorghum	cytosol	31.01	23.22
HORVU3Hr1G074970.1	Barley	cytosol, nucleus	25.95	16.27
OQU90298	Sorghum	cytosol	34.18	15.47
TraesCS3B01G340200.1	Wheat	cytosol	32.91	12.47
TraesCS3B01G340100.1	Wheat	nucleus	37.34	11.35
TraesCS3D01G305500.1	Wheat	cytosol	34.81	10.76
TraesCS3A01G297000.1	Wheat	cytosol	36.08	10.75

Protein Annotations

EntrezGene:107063500	MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	UniProt:M1DXE1	PFAM:PF01466	PFAM:PF03931
EnsemblPlantsGene:PGSC0003DMG400045524	PGSC:PGSC0003DMG400045524	EnsemblPlants:PGSC0003DMT400095953	PIRSF:PIRSF028729	PANTHER:PTHR11165	PANTHER:PTHR11165:SF86
InterPro:SKP1	InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf	SMART:SM00512	SUPFAM:SSF54695
SUPFAM:SSF81382	InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	UniParc:UPI0002962DC0	RefSeq:XP_015170905.1	SEG:seg

Description

Skp1 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400045524]

Coordinates

chr11:-:3838222..3838698

Molecular Weight (calculated)

18384.7 Da

IEP (calculated)

4.281

GRAVY (calculated)

-0.618

Length

158 amino acids

Sequence
(BLAST)

001: MASKKLVLKS SDGDEFEIEE SIAVQSGTIK NMVDDDYTLI PLPNVNTQKL ILIIEYMNKH AEKTDSNEEE IKEFDKEFLK DKNYQNMFEL VVAANYLHIS
101: DLMNLLCQTI ADRIKNKSVK AIREIFGIIN DYTPEEEERV REEHKWAHEG EDIDESLD

Best Arabidopsis Sequence Match ( AT4G34210.1 )
(BLAST)

001: MSSKMIVLMS SDGQSFEVEE AVAIQSQTIA HMVEDDCVAD GIPLANVESK ILVKVIEYCK KHHVDEANPI SEEDLNNWDE KFMDLEQSTI FELILAANYL
101: NIKSLLDLTC QTVADMIKGK TPEEIRSTFN IENDFTPEEE EAVRKENQWA FE

Arabidopsis Description

ASK11SKP1-like protein 11 [Source:UniProtKB/Swiss-Prot;Acc:O49484]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.