Factsheet for Os09t0539500-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plasma membrane, plastid

Predictor Summary:

nucleus 2
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G016900.1	Wheat	cytosol	75.43	78.11
TraesCS7A01G020600.1	Wheat	cytosol	76.0	77.33
TraesCS4A01G472600.1	Wheat	cytosol	76.0	77.33
Os11t0456300-01	Rice	plasma membrane	76.0	76.88
HORVU7Hr1G002220.1	Barley	cytosol, plastid	72.57	60.48
PGSC0003DMT400088621	Potato	cytosol	40.0	59.83
CDY03015	Canola	cytosol	50.29	58.28
PGSC0003DMT400090609	Potato	cytosol	49.14	56.95
PGSC0003DMT400093573	Potato	cytosol	48.57	56.29
PGSC0003DMT400038385	Potato	cytosol	48.57	56.29
PGSC0003DMT400088820	Potato	cytosol	48.57	56.29
Os08t0375500-00	Rice	cytosol	54.29	56.21
Os09t0412050-00	Rice	cytosol	53.71	55.95
Solyc03g112710.1.1	Tomato	cytosol	48.0	55.63
Os08t0375700-00	Rice	cytosol	53.71	55.62
PGSC0003DMT400097239	Potato	cytosol	47.43	54.97
Os09t0273800-01	Rice	cytosol	52.0	54.49
PGSC0003DMT400088220	Potato	cytosol	46.86	54.3
PGSC0003DMT400093419	Potato	cytosol	46.29	53.64
PGSC0003DMT400087694	Potato	cytosol	45.14	52.67
Os09t0274800-00	Rice	cytosol	50.29	51.16
PGSC0003DMT400085217	Potato	cytosol	37.71	50.77
PGSC0003DMT400085417	Potato	cytosol	36.0	50.0
Os06t0113800-00	Rice	cytosol	46.86	49.4
PGSC0003DMT400088079	Potato	cytosol	32.0	48.7
VIT_19s0085g00180.t01	Wine grape	cytosol	42.29	48.68
PGSC0003DMT400086770	Potato	cytosol	34.86	48.41
GSMUA_Achr4P25740_001	Banana	cytosol	40.57	47.97
PGSC0003DMT400096238	Potato	cytosol	40.57	47.65
Os09t0275200-01	Rice	cytosol	43.43	47.5
VIT_10s0003g05820.t01	Wine grape	cytosol	43.43	46.91
VIT_15s0045g00490.t01	Wine grape	cytosol	40.0	46.36
Solyc11g008230.1.1	Tomato	cytosol	41.14	45.57
Os02t0101600-00	Rice	cytosol	41.71	45.34
PGSC0003DMT400093338	Potato	cytosol	43.43	45.24
Os07t0625600-00	Rice	cytosol	45.14	44.38
PGSC0003DMT400095953	Potato	cytosol	40.0	44.3
Solyc03g093190.1.1	Tomato	cytosol	30.86	44.26
PGSC0003DMT400090072	Potato	cytosol	25.71	44.12
VIT_19s0085g00190.t01	Wine grape	cytosol	39.43	43.95
PGSC0003DMT400091657	Potato	cytosol	39.43	43.67
Os07t0624900-00	Rice	cytosol	49.71	43.5
PGSC0003DMT400089461	Potato	cytosol	31.43	43.31
GSMUA_Achr4P25750_001	Banana	cytosol	43.43	42.94
Os07t0625500-01	Rice	cytosol	42.29	42.53
Solyc11g008400.1.1	Tomato	cytosol	42.29	41.11
PGSC0003DMT400019185	Potato	cytosol	42.29	41.11
Solyc11g008240.1.1	Tomato	cytosol	34.86	38.61
Os10t0438100-00	Rice	cytosol	48.0	38.18
PGSC0003DMT400096074	Potato	cytosol	37.14	37.79
KRH13748	Soybean	cytosol	38.86	37.16
PGSC0003DMT400019237	Potato	cytosol	37.14	34.39
Solyc11g008420.1.1	Tomato	cytosol	34.86	32.28

Protein Annotations

MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	EntrezGene:4347721	EMBL:AK241794	ProteinID:BAD46569.1	ProteinID:BAT09185.1
ProteinID:EEE70133.1	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0019538	EnsemblPlantsGene:Os09g0539500	EnsemblPlants:Os09t0539500-01	PFAM:PF01466	PFAM:PF03931	PIRSF:PIRSF028729
PANTHER:PTHR11165	PANTHER:PTHR11165:SF89	UniProt:Q651E8	InterPro:SKP1	InterPro:SKP1-like	InterPro:SKP1-like_dim_sf
InterPro:SKP1/BTB/POZ_sf	SMART:SM00512	SUPFAM:SSF54695	SUPFAM:SSF81382	InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer
UniParc:UPI00003FF573	RefSeq:XP_015651187.1	SEG:seg	:	:	:

Description

S-PHASE KINASE-ASSOCIATED PROTEIN1-LIKE PROTEIN 20, Oryza sativa SKP1-like gene 20Similar to SKP1-like protein 1A. (Os09t0539500-01)

Coordinates

chr9:-:21243207..21245827

Molecular Weight (calculated)

19197.7 Da

IEP (calculated)

4.288

GRAVY (calculated)

-0.242

Length

175 amino acids

Sequence
(BLAST)

001: MAAEAETKAM ITLRSCEGQV FEVAEAVAME SQTIRHMIED KCADTGIPLP NVSAKILSKV IEYCSKHVEA RGGAAAAADG DAPAPAAVEA NKAVEDELKT
101: FDAEFVKVDQ STLFDLILAA NYLNIKGLLD LTCQTVADMI KGKTPEEIRK TFNIKNDFTP EEEEEVRREN QWAFE

Best Arabidopsis Sequence Match ( AT5G42190.1 )
(BLAST)

001: MSTVRKITLK SSDGENFEID EAVALESQTI KHMIEDDCTD NGIPLPNVTS KILSKVIEYC KRHVEAAEKS ETTADAAAAT TTTTVASGSS DEDLKTWDSE
101: FIKVDQGTLF DLILAANYLN IKGLLDLTCQ TVADMIKGKT PEEIRKTFNI KNDFTPEEEE EVRRENQWAF E

Arabidopsis Description

SKP1BSKP1-like protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9FHW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.