Factsheet for PGSC0003DMT400088621

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

golgi 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400088820	Potato	cytosol	89.74	69.54
PGSC0003DMT400090609	Potato	cytosol	88.89	68.87
PGSC0003DMT400038385	Potato	cytosol	88.03	68.21
PGSC0003DMT400093573	Potato	cytosol	87.18	67.55
PGSC0003DMT400097239	Potato	cytosol	85.47	66.23
PGSC0003DMT400088220	Potato	cytosol	83.76	64.9
PGSC0003DMT400087694	Potato	cytosol	82.91	64.67
PGSC0003DMT400086770	Potato	cytosol	69.23	64.29
PGSC0003DMT400093419	Potato	cytosol	81.2	62.91
PGSC0003DMT400088079	Potato	cytosol	61.54	62.61
PGSC0003DMT400085217	Potato	cytosol	69.23	62.31
PGSC0003DMT400085417	Potato	cytosol	66.67	61.9
TraesCS6B01G053400.1	Wheat	cytosol	62.39	53.28
TraesCS5A01G462800.1	Wheat	cytosol	60.68	52.99
OQU87046	Sorghum	cytosol	58.97	51.49
TraesCS3B01G566400.1	Wheat	cytosol	61.54	50.35
PGSC0003DMT400096238	Potato	cytosol	64.1	50.34
PGSC0003DMT400068727	Potato	cytosol	62.39	48.67
PGSC0003DMT400024783	Potato	cytosol	60.68	47.33
PGSC0003DMT400068726	Potato	cytosol	59.83	46.67
PGSC0003DMT400093338	Potato	cytosol	66.67	46.43
TraesCS7A01G193600.1	Wheat	cytosol	52.99	45.59
TraesCS4A01G366400.1	Wheat	cytosol	63.25	45.12
TraesCS5B01G474100.1	Wheat	cytosol	62.39	45.06
PGSC0003DMT400015825	Potato	cytosol	59.83	44.87
TraesCS2D01G560400.1	Wheat	cytosol	62.39	44.51
TraesCS2D01G560500.1	Wheat	cytosol	62.39	44.51
TraesCS2D01G560700.1	Wheat	cytosol	62.39	44.51
PGSC0003DMT400068720	Potato	cytosol	56.41	44.3
TraesCS6A01G000300.1	Wheat	cytosol	61.54	44.17
TraesCS6B01G004300.1	Wheat	cytosol	61.54	44.17
TraesCS2D01G560300.1	Wheat	cytosol	60.68	43.29
TraesCS6D01G045500.1	Wheat	cytosol	62.39	43.2
TraesCS7D01G016900.1	Wheat	cytosol	62.39	43.2
TraesCS6D01G044400.1	Wheat	cytosol	49.57	42.96
TraesCS3B01G308600.1	Wheat	cytosol	59.83	42.94
TraesCS3D01G509600.1	Wheat	cytosol	62.39	42.44
TraesCS4A01G472600.1	Wheat	cytosol	62.39	42.44
TraesCS7A01G020600.1	Wheat	cytosol	62.39	42.44
PGSC0003DMT400015827	Potato	cytosol	57.27	42.41
TraesCS5D01G475600.1	Wheat	cytosol	63.25	42.29
TraesCS2B01G590600.1	Wheat	cytosol	62.39	41.95
TraesCS2D01G420100.1	Wheat	cytosol	62.39	41.71
Os11t0456300-01	Rice	plasma membrane	61.54	41.62
HORVU5Hr1G110760.2	Barley	cytosol	56.41	41.51
EES09697	Sorghum	cytosol	62.39	41.48
Zm00001d049230_P001	Maize	mitochondrion	62.39	41.48
EES06093	Sorghum	cytosol	59.83	41.42
PGSC0003DMT400096074	Potato	cytosol	60.68	41.28
TraesCS5D01G475400.1	Wheat	golgi, plastid, unclear	61.54	41.14
TraesCS6D01G001600.1	Wheat	cytosol	61.54	41.14
TraesCS7D01G194900.1	Wheat	cytosol	61.54	41.14
TraesCS5D01G105800.1	Wheat	cytosol	51.28	41.1
EES13900	Sorghum	cytosol	58.97	41.07
TraesCS7A01G498800.1	Wheat	cytosol	57.27	40.61
TraesCS7B01G098900.1	Wheat	cytosol	60.68	40.57
TraesCS2B01G442100.1	Wheat	mitochondrion	61.54	40.45
Os09t0539500-01	Rice	cytosol, plasma membrane, plastid	59.83	40.0
HORVU2Hr1G115410.2	Barley	cytosol	57.27	39.88
HORVU5Hr1G110850.1	Barley	cytosol	59.83	39.33
TraesCS7D01G544900.1	Wheat	cytosol	47.86	39.16
HORVU5Hr1G110810.1	Barley	cytosol	51.28	38.96
HORVU5Hr1G110720.2	Barley	cytosol	58.97	38.76
HORVU5Hr1G110840.1	Barley	cytosol	58.12	38.64
TraesCS2A01G522300.1	Wheat	cytosol	58.12	38.64
HORVU2Hr1G115400.1	Barley	cytosol	58.12	38.42
HORVU5Hr1G090360.1	Barley	cytosol	58.12	38.2
EER99267	Sorghum	cytosol	56.41	38.15
HORVU2Hr1G115420.1	Barley	cytosol	57.27	37.85
Os09t0412050-00	Rice	cytosol	53.85	37.5
HORVU2Hr1G115380.1	Barley	cytosol	57.27	37.22
HORVU3Hr1G089860.3	Barley	cytosol	57.27	37.22
Os09t0273800-01	Rice	cytosol	52.99	37.13
CDY03015	Canola	cytosol	47.86	37.09
HORVU5Hr1G110800.1	Barley	cytosol	56.41	37.08
HORVU5Hr1G110820.2	Barley	cytosol	56.41	37.08
PGSC0003DMT400089461	Potato	cytosol	40.17	37.01
HORVU5Hr1G110830.3	Barley	cytosol	56.41	36.87
HORVU7Hr1G103140.2	Barley	cytosol	55.56	36.11
HORVU7Hr1G099860.2	Barley	cytosol, mitochondrion, nucleus	53.85	36.0
TraesCS5B01G165700.1	Wheat	cytosol	53.85	36.0
Os08t0375500-00	Rice	cytosol	51.28	35.5
HORVU7Hr1G099950.1	Barley	cytosol	52.14	35.26
TraesCS2D01G524400.1	Wheat	cytosol	48.72	35.19
TraesCS5D01G173200.1	Wheat	cytosol	53.85	35.0
Os08t0375700-00	Rice	cytosol	50.43	34.91
TraesCS5B01G099600.1	Wheat	cytosol	52.14	34.86
TraesCS6D01G002600.1	Wheat	cytosol	52.14	34.86
TraesCS5A01G168900.1	Wheat	cytosol	53.85	34.62
TraesCS5A01G093500.1	Wheat	cytosol	48.72	34.55
Zm00001d022618_P001	Maize	cytosol	50.43	34.5
Os06t0113800-00	Rice	cytosol	48.72	34.34
HORVU7Hr1G099840.1	Barley	cytosol	51.28	34.29
HORVU7Hr1G002220.1	Barley	cytosol, plastid	60.68	33.81
GSMUA_Achr4P25740_001	Banana	cytosol	42.73	33.78
VIT_15s0045g00490.t01	Wine grape	cytosol	43.59	33.77
TraesCS4B01G337400.1	Wheat	cytosol	45.3	33.54
TraesCS7A01G565800.1	Wheat	cytosol	50.43	33.52
TraesCS7B01G492200.1	Wheat	cytosol	50.43	33.52
TraesCS7B01G492300.1	Wheat	cytosol	50.43	33.52
TraesCS7B01G492500.1	Wheat	cytosol	50.43	33.52
TraesCS7D01G545000.2	Wheat	cytosol	48.72	33.33
Zm00001d007590_P001	Maize	cytosol	52.99	32.98
VIT_19s0085g00180.t01	Wine grape	cytosol	42.73	32.89
Os09t0274800-00	Rice	cytosol	47.86	32.56
Zm00001d007659_P001	Maize	cytosol	52.99	32.29
TraesCS6B01G008800.1	Wheat	cytosol	47.86	32.0
Zm00001d007589_P001	Maize	cytosol	52.99	31.96
TraesCS7B01G492400.1	Wheat	cytosol	47.86	31.82
Zm00001d007586_P001	Maize	cytosol	51.28	31.25
TraesCS5D01G176900.1	Wheat	cytosol	52.14	31.12
TraesCS5B01G372700.1	Wheat	cytosol	42.73	30.86
TraesCS3A01G374400.1	Wheat	cytosol	42.73	30.67
TraesCS5D01G379900.1	Wheat	cytosol	38.46	30.61
TraesCS5B01G169700.1	Wheat	cytosol	52.14	30.5
TraesCS7A01G565700.1	Wheat	cytosol	44.44	30.41
TraesCS6A01G016900.1	Wheat	cytosol	46.15	30.34
VIT_10s0003g05820.t01	Wine grape	cytosol	41.88	30.25
HORVU5Hr1G110790.1	Barley	cytosol	26.5	30.1
TraesCS3B01G406500.1	Wheat	cytosol	41.88	30.06
TraesCS5A01G172300.1	Wheat	cytosol	50.43	29.95
Os07t0625600-00	Rice	cytosol	45.3	29.78
Os09t0275200-01	Rice	cytosol	40.17	29.38
TraesCS2A01G574500.1	Wheat	cytosol	41.88	29.17
TraesCS6B01G024700.1	Wheat	cytosol	41.88	29.17
PGSC0003DMT400095953	Potato	cytosol	39.32	29.11
TraesCS3B01G092200.1	Wheat	cytosol	41.03	28.92
PGSC0003DMT400019185	Potato	cytosol	44.44	28.89
TraesCS3D01G077800.1	Wheat	cytosol	41.03	28.57
OQU76826	Sorghum	cytosol	41.03	27.75
Os07t0625500-01	Rice	cytosol	41.03	27.59
TraesCS4A01G379700.1	Wheat	cytosol	35.04	27.52
KRH13748	Soybean	cytosol	42.73	27.32
PGSC0003DMT400091657	Potato	cytosol	36.75	27.22
TraesCS1D01G201900.1	Wheat	cytosol	38.46	27.11
VIT_19s0085g00190.t01	Wine grape	cytosol	35.9	26.75
HORVU5Hr1G092210.1	Barley	cytosol	36.75	26.71
GSMUA_Achr4P25750_001	Banana	cytosol	40.17	26.55
PGSC0003DMT400090072	Potato	cytosol	23.08	26.47
PGSC0003DMT400094745	Potato	cytosol	23.08	25.71
Os07t0624900-00	Rice	cytosol	42.73	25.0
TraesCS6A01G017300.1	Wheat	cytosol	33.33	25.0
TraesCS6D01G020500.1	Wheat	cytosol	33.33	25.0
Os10t0438100-00	Rice	cytosol	46.15	24.55
HORVU7Hr1G099790.1	Barley	cytosol, plastid	41.03	24.37
Zm00001d042677_P001	Maize	plastid	53.85	23.86
TraesCS1A01G129800.1	Wheat	cytosol	46.15	22.88
TraesCS1B01G156000.1	Wheat	cytosol	46.15	22.88
TraesCS1D01G138400.1	Wheat	cytosol	46.15	22.69
PGSC0003DMT400019237	Potato	cytosol	35.9	22.22
HORVU1Hr1G035930.1	Barley	cytosol	45.3	21.9
EER94185	Sorghum	cytosol	38.46	21.33
Os02t0101600-00	Rice	cytosol	26.5	19.25
OQU90298	Sorghum	cytosol	47.01	15.76
HORVU3Hr1G074970.1	Barley	cytosol, nucleus	31.62	14.68
TraesCS3B01G340200.1	Wheat	cytosol	41.03	11.51
TraesCS3A01G297000.1	Wheat	cytosol	47.01	10.38
TraesCS3D01G305500.1	Wheat	cytosol	45.3	10.37
TraesCS3B01G340100.1	Wheat	nucleus	41.03	9.23

Protein Annotations

EntrezGene:107060591	MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	UniProt:M1DGD0	PFAM:PF01466	PFAM:PF03931
EnsemblPlantsGene:PGSC0003DMG400038192	PGSC:PGSC0003DMG400038192	EnsemblPlants:PGSC0003DMT400088621	PIRSF:PIRSF028729	PANTHER:PTHR11165	PANTHER:PTHR11165:SF89
InterPro:SKP1	InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf	SMART:SM00512	SUPFAM:SSF54695
SUPFAM:SSF81382	InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	UniParc:UPI000296F572	RefSeq:XP_015164117.1	:

Description

Skp1 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400038192]

Coordinates

chr2:+:34621036..34621389

Molecular Weight (calculated)

13745.4 Da

IEP (calculated)

4.617

GRAVY (calculated)

-0.485

Length

117 amino acids

Sequence
(BLAST)

001: MVEDDCVSNI IPLPNVHSKT MIKVIEYWKK HSEESVSKDM LIDFDKAFVN VHHSILYDLI LAANFLNDKE ILDMMCQEVA DRVKGKTPEE IRKEFDIKND
101: FTPEEDEKIR KENAWGF

Best Arabidopsis Sequence Match ( AT4G34210.1 )
(BLAST)

001: MSSKMIVLMS SDGQSFEVEE AVAIQSQTIA HMVEDDCVAD GIPLANVESK ILVKVIEYCK KHHVDEANPI SEEDLNNWDE KFMDLEQSTI FELILAANYL
101: NIKSLLDLTC QTVADMIKGK TPEEIRSTFN IENDFTPEEE EAVRKENQWA FE

Arabidopsis Description

ASK11SKP1-like protein 11 [Source:UniProtKB/Swiss-Prot;Acc:O49484]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.