Factsheet for Zm00001d049230_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES09697	Sorghum	cytosol	99.43	99.43
Os11t0456300-01	Rice	plasma membrane	92.61	94.22
PGSC0003DMT400088621	Potato	cytosol	41.48	62.39
Solyc03g112710.1.1	Tomato	cytosol	52.84	61.59
PGSC0003DMT400038385	Potato	cytosol	52.27	60.93
PGSC0003DMT400093573	Potato	cytosol	52.27	60.93
PGSC0003DMT400090609	Potato	cytosol	52.27	60.93
Zm00001d007590_P001	Maize	cytosol	64.77	60.64
PGSC0003DMT400088820	Potato	cytosol	51.14	59.6
CDY03015	Canola	cytosol	50.57	58.94
Zm00001d007589_P001	Maize	cytosol	64.77	58.76
Zm00001d007659_P001	Maize	cytosol	63.64	58.33
Zm00001d007586_P001	Maize	cytosol	63.64	58.33
PGSC0003DMT400088220	Potato	cytosol	50.0	58.28
PGSC0003DMT400093419	Potato	cytosol	49.43	57.62
PGSC0003DMT400087694	Potato	cytosol	48.3	56.67
PGSC0003DMT400097239	Potato	cytosol	48.3	56.29
Zm00001d022618_P001	Maize	cytosol	54.55	56.14
PGSC0003DMT400085217	Potato	cytosol	40.91	55.38
VIT_19s0085g00180.t01	Wine grape	cytosol	47.16	54.61
PGSC0003DMT400088079	Potato	cytosol	34.66	53.04
PGSC0003DMT400086770	Potato	cytosol	37.5	52.38
PGSC0003DMT400096238	Potato	cytosol	43.18	51.01
PGSC0003DMT400085417	Potato	cytosol	36.36	50.79
Solyc11g008230.1.1	Tomato	cytosol	45.45	50.63
VIT_15s0045g00490.t01	Wine grape	cytosol	43.18	50.33
PGSC0003DMT400090072	Potato	cytosol	28.98	50.0
VIT_10s0003g05820.t01	Wine grape	cytosol	45.45	49.38
GSMUA_Achr4P25740_001	Banana	cytosol	41.48	49.32
PGSC0003DMT400095953	Potato	cytosol	43.18	48.1
PGSC0003DMT400093338	Potato	cytosol	44.89	47.02
PGSC0003DMT400091657	Potato	cytosol	42.05	46.84
VIT_19s0085g00190.t01	Wine grape	cytosol	41.48	46.5
PGSC0003DMT400019185	Potato	cytosol	47.16	46.11
Solyc03g093190.1.1	Tomato	cytosol	31.82	45.9
Solyc11g008400.1.1	Tomato	cytosol	46.59	45.56
Zm00001d042677_P001	Maize	plastid	67.05	44.7
GSMUA_Achr4P25750_001	Banana	cytosol	43.75	43.5
Solyc11g008240.1.1	Tomato	cytosol	38.64	43.04
PGSC0003DMT400089461	Potato	cytosol	30.68	42.52
KRH13748	Soybean	cytosol	42.05	40.44
PGSC0003DMT400096074	Potato	cytosol	36.93	37.79
PGSC0003DMT400019237	Potato	cytosol	38.07	35.45
Solyc11g008420.1.1	Tomato	cytosol	35.23	32.8

Protein Annotations

MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	ProteinID:AQK49899.1	ProteinID:AQK49900.1	UniProt:B4FST4	EMBL:BT040172
EMBL:BT040476	EMBL:BT040960	EMBL:BT041433	EMBL:EU953035	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	PFAM:PF01466	PFAM:PF03931
PIRSF:PIRSF028729	PANTHER:PTHR11165	PANTHER:PTHR11165:SF89	InterPro:SKP1	InterPro:SKP1-like	InterPro:SKP1-like_dim_sf
InterPro:SKP1/BTB/POZ_sf	SMART:SM00512	SUPFAM:SSF54695	SUPFAM:SSF81382	InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer
UniParc:UPI00017B79D1	EnsemblPlantsGene:Zm00001d049230	EnsemblPlants:Zm00001d049230_P001	EnsemblPlants:Zm00001d049230_T001	SEG:seg	:

Description

SKP1-like protein 1A

Coordinates

chr4:-:21788911..21795688

Molecular Weight (calculated)

19255.5 Da

IEP (calculated)

4.238

GRAVY (calculated)

-0.395

Length

176 amino acids

Sequence
(BLAST)

001: MAAEGEKKMI TLKSSDGEEF EVEEAVAMES QTIRHMIEDD CADNGIPLPN VNSKILSKVI EYCNKHVHAA AAAAAASKAG SDDVGAASAN STAASGEDLK
101: NWDADFVKVD QATLFDLILA ANYLNIKGLL DLTCQTVADM IKGKTPEEIR KTFNIKNDFT PEEEEEIRRE NQWAFE

Best Arabidopsis Sequence Match ( AT5G42190.1 )
(BLAST)

001: MSTVRKITLK SSDGENFEID EAVALESQTI KHMIEDDCTD NGIPLPNVTS KILSKVIEYC KRHVEAAEKS ETTADAAAAT TTTTVASGSS DEDLKTWDSE
101: FIKVDQGTLF DLILAANYLN IKGLLDLTCQ TVADMIKGKT PEEIRKTFNI KNDFTPEEEE EVRRENQWAF E

Arabidopsis Description

SKP1BSKP1-like protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9FHW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.