Factsheet for PGSC0003DMT400089461

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400095953	Potato	cytosol	85.04	68.35
PGSC0003DMT400091657	Potato	cytosol	83.46	67.09
PGSC0003DMT400090072	Potato	cytosol	45.67	56.86
PGSC0003DMT400088621	Potato	cytosol	37.01	40.17
OQU87046	Sorghum	cytosol	40.94	38.81
TraesCS5A01G462800.1	Wheat	cytosol	40.94	38.81
PGSC0003DMT400068727	Potato	cytosol	44.88	38.0
TraesCS6B01G053400.1	Wheat	cytosol	40.94	37.96
TraesCS3B01G566400.1	Wheat	cytosol	42.52	37.76
PGSC0003DMT400024783	Potato	cytosol	44.09	37.33
PGSC0003DMT400019237	Potato	cytosol	55.12	37.04
PGSC0003DMT400068720	Potato	cytosol	42.52	36.24
TraesCS7A01G193600.1	Wheat	cytosol	38.58	36.03
PGSC0003DMT400015825	Potato	cytosol	44.09	35.9
PGSC0003DMT400068726	Potato	cytosol	40.94	34.67
TraesCS5D01G105800.1	Wheat	cytosol	39.37	34.25
HORVU5Hr1G110760.2	Barley	cytosol	42.52	33.96
TraesCS2D01G560400.1	Wheat	cytosol	43.31	33.54
TraesCS2D01G560700.1	Wheat	cytosol	43.31	33.54
TraesCS4A01G366400.1	Wheat	cytosol	43.31	33.54
TraesCS5B01G474100.1	Wheat	cytosol	42.52	33.33
TraesCS6D01G044400.1	Wheat	cytosol	35.43	33.33
TraesCS6A01G000300.1	Wheat	cytosol	42.52	33.13
TraesCS6B01G004300.1	Wheat	cytosol	42.52	33.13
HORVU5Hr1G110810.1	Barley	cytosol	40.16	33.12
PGSC0003DMT400038385	Potato	cytosol	39.37	33.11
PGSC0003DMT400088820	Potato	cytosol	39.37	33.11
EER99267	Sorghum	cytosol	44.88	32.95
TraesCS2D01G560300.1	Wheat	cytosol	42.52	32.93
TraesCS2D01G560500.1	Wheat	cytosol	42.52	32.93
PGSC0003DMT400087694	Potato	cytosol	38.58	32.67
TraesCS7B01G098900.1	Wheat	cytosol	44.88	32.57
TraesCS7D01G194900.1	Wheat	cytosol	44.88	32.57
Os08t0375500-00	Rice	cytosol	43.31	32.54
Os08t0375700-00	Rice	cytosol	43.31	32.54
TraesCS3B01G308600.1	Wheat	cytosol	41.73	32.52
CDY03015	Canola	cytosol	38.58	32.45
PGSC0003DMT400090609	Potato	cytosol	38.58	32.45
PGSC0003DMT400015827	Potato	cytosol	40.16	32.28
TraesCS2B01G442100.1	Wheat	mitochondrion	44.88	32.02
TraesCS3D01G509600.1	Wheat	cytosol	43.31	31.98
PGSC0003DMT400093573	Potato	cytosol	37.8	31.79
PGSC0003DMT400019185	Potato	cytosol	44.88	31.67
Os09t0539500-01	Rice	cytosol, plasma membrane, plastid	43.31	31.43
TraesCS2D01G420100.1	Wheat	cytosol	43.31	31.43
TraesCS5D01G475400.1	Wheat	golgi, plastid, unclear	43.31	31.43
TraesCS5D01G475600.1	Wheat	cytosol	43.31	31.43
TraesCS6D01G045500.1	Wheat	cytosol	41.73	31.36
TraesCS7D01G016900.1	Wheat	cytosol	41.73	31.36
Os11t0456300-01	Rice	plasma membrane	42.52	31.21
Os09t0273800-01	Rice	cytosol	40.94	31.14
TraesCS2B01G590600.1	Wheat	cytosol	42.52	31.03
EES13900	Sorghum	cytosol	40.94	30.95
TraesCS5A01G093500.1	Wheat	cytosol	40.16	30.91
TraesCS6D01G001600.1	Wheat	cytosol	42.52	30.86
TraesCS4A01G472600.1	Wheat	cytosol	41.73	30.81
TraesCS7A01G020600.1	Wheat	cytosol	41.73	30.81
EES06093	Sorghum	cytosol	40.94	30.77
EES09697	Sorghum	cytosol	42.52	30.68
TraesCS2A01G522300.1	Wheat	cytosol	42.52	30.68
Zm00001d049230_P001	Maize	mitochondrion	42.52	30.68
HORVU5Hr1G110850.1	Barley	cytosol	42.52	30.34
VIT_19s0085g00180.t01	Wine grape	cytosol	36.22	30.26
HORVU5Hr1G110830.3	Barley	cytosol	42.52	30.17
HORVU5Hr1G110840.1	Barley	cytosol	41.73	30.11
KRH13748	Soybean	cytosol	43.31	30.05
PGSC0003DMT400097239	Potato	cytosol	35.43	29.8
HORVU5Hr1G110720.2	Barley	cytosol	41.73	29.78
HORVU5Hr1G110800.1	Barley	cytosol	41.73	29.78
HORVU5Hr1G110820.2	Barley	cytosol	41.73	29.78
HORVU2Hr1G115410.2	Barley	cytosol	39.37	29.76
HORVU5Hr1G090360.1	Barley	cytosol	40.94	29.21
Os09t0412050-00	Rice	cytosol	38.58	29.17
TraesCS5B01G099600.1	Wheat	cytosol	40.16	29.14
TraesCS6D01G002600.1	Wheat	cytosol	40.16	29.14
PGSC0003DMT400088220	Potato	cytosol	34.65	29.14
PGSC0003DMT400093419	Potato	cytosol	34.65	29.14
Os09t0274800-00	Rice	cytosol	39.37	29.07
GSMUA_Achr4P25740_001	Banana	cytosol	33.86	29.05
Os06t0113800-00	Rice	cytosol	37.8	28.92
HORVU2Hr1G115420.1	Barley	cytosol	40.16	28.81
TraesCS7D01G544900.1	Wheat	cytosol	32.28	28.67
HORVU7Hr1G099840.1	Barley	cytosol	39.37	28.57
PGSC0003DMT400085217	Potato	cytosol	29.13	28.46
TraesCS7B01G492200.1	Wheat	cytosol	39.37	28.41
TraesCS2D01G524400.1	Wheat	cytosol	36.22	28.4
HORVU2Hr1G115380.1	Barley	cytosol	40.16	28.33
HORVU7Hr1G099950.1	Barley	cytosol	38.58	28.32
Zm00001d022618_P001	Maize	cytosol	37.8	28.07
HORVU7Hr1G099860.2	Barley	cytosol, mitochondrion, nucleus	38.58	28.0
TraesCS5B01G165700.1	Wheat	cytosol	38.58	28.0
TraesCS7B01G492300.1	Wheat	cytosol	38.58	27.84
PGSC0003DMT400088079	Potato	cytosol	25.2	27.83
HORVU7Hr1G103140.2	Barley	cytosol	39.37	27.78
HORVU2Hr1G115400.1	Barley	cytosol	38.58	27.68
Zm00001d007590_P001	Maize	cytosol	40.94	27.66
Zm00001d007659_P001	Maize	cytosol	41.73	27.6
TraesCS7A01G565700.1	Wheat	cytosol	37.01	27.49
TraesCS6B01G008800.1	Wheat	cytosol	37.8	27.43
TraesCS6B01G024700.1	Wheat	cytosol	36.22	27.38
TraesCS7A01G498800.1	Wheat	cytosol	35.43	27.27
TraesCS7A01G565800.1	Wheat	cytosol	37.8	27.27
TraesCS7B01G492500.1	Wheat	cytosol	37.8	27.27
HORVU3Hr1G089860.3	Barley	cytosol	38.58	27.22
TraesCS5D01G173200.1	Wheat	cytosol	38.58	27.22
OQU76826	Sorghum	cytosol	37.01	27.17
PGSC0003DMT400086770	Potato	cytosol	26.77	26.98
TraesCS5A01G168900.1	Wheat	cytosol	38.58	26.92
Zm00001d007589_P001	Maize	cytosol	40.94	26.8
Zm00001d007586_P001	Maize	cytosol	40.16	26.56
VIT_10s0003g05820.t01	Wine grape	cytosol	33.86	26.54
TraesCS4B01G337400.1	Wheat	cytosol	32.28	25.95
TraesCS5B01G372700.1	Wheat	cytosol	33.07	25.93
TraesCS1D01G201900.1	Wheat	cytosol	33.86	25.9
TraesCS3B01G092200.1	Wheat	cytosol	33.86	25.9
TraesCS5A01G172300.1	Wheat	cytosol	40.16	25.89
TraesCS7D01G545000.2	Wheat	cytosol	34.65	25.73
PGSC0003DMT400093338	Potato	cytosol	33.86	25.6
PGSC0003DMT400096074	Potato	cytosol	34.65	25.58
TraesCS7B01G492400.1	Wheat	cytosol	35.43	25.57
TraesCS5D01G176900.1	Wheat	cytosol	39.37	25.51
TraesCS5B01G169700.1	Wheat	cytosol	40.16	25.5
PGSC0003DMT400085417	Potato	cytosol	25.2	25.4
VIT_15s0045g00490.t01	Wine grape	cytosol	29.92	25.17
TraesCS3D01G077800.1	Wheat	cytosol	33.07	25.0
PGSC0003DMT400096238	Potato	cytosol	29.13	24.83
Os07t0625600-00	Rice	cytosol	34.65	24.72
TraesCS5D01G379900.1	Wheat	cytosol	28.35	24.49
Os09t0275200-01	Rice	cytosol	30.71	24.38
TraesCS6A01G016900.1	Wheat	cytosol	33.86	24.16
TraesCS3A01G374400.1	Wheat	cytosol	30.71	23.93
HORVU7Hr1G002220.1	Barley	cytosol, plastid	39.37	23.81
TraesCS2A01G574500.1	Wheat	cytosol	31.5	23.81
GSMUA_Achr4P25750_001	Banana	cytosol	33.07	23.73
Os07t0625500-01	Rice	cytosol	31.5	22.99
PGSC0003DMT400094745	Potato	cytosol	18.9	22.86
TraesCS4A01G379700.1	Wheat	cytosol	26.77	22.82
TraesCS6D01G020500.1	Wheat	cytosol	27.56	22.44
HORVU5Hr1G110790.1	Barley	cytosol	18.11	22.33
VIT_19s0085g00190.t01	Wine grape	cytosol	27.56	22.29
HORVU5Hr1G092210.1	Barley	cytosol	27.56	21.74
Os07t0624900-00	Rice	cytosol	33.86	21.5
TraesCS3B01G406500.1	Wheat	cytosol	27.56	21.47
TraesCS6A01G017300.1	Wheat	cytosol	25.98	21.15
Os10t0438100-00	Rice	cytosol	34.65	20.0
Zm00001d042677_P001	Maize	plastid	40.94	19.7
TraesCS1B01G156000.1	Wheat	cytosol	36.22	19.49
TraesCS1A01G129800.1	Wheat	cytosol	35.43	19.07
TraesCS1D01G138400.1	Wheat	cytosol	35.43	18.91
HORVU7Hr1G099790.1	Barley	cytosol, plastid	28.35	18.27
HORVU1Hr1G035930.1	Barley	cytosol	34.65	18.18
EER94185	Sorghum	cytosol	29.92	18.01
Os02t0101600-00	Rice	cytosol	16.54	13.04
HORVU3Hr1G074970.1	Barley	cytosol, nucleus	23.62	11.9
OQU90298	Sorghum	cytosol	31.5	11.46
TraesCS3B01G340200.1	Wheat	cytosol	30.71	9.35
TraesCS3B01G340100.1	Wheat	nucleus	33.86	8.27
TraesCS3A01G297000.1	Wheat	cytosol	33.07	7.92
TraesCS3D01G305500.1	Wheat	cytosol	31.5	7.83

Protein Annotations

MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019538	UniProt:M1DI75	PFAM:PF01466	EnsemblPlantsGene:PGSC0003DMG400039032	PGSC:PGSC0003DMG400039032
EnsemblPlants:PGSC0003DMT400089461	PIRSF:PIRSF028729	PANTHER:PTHR11165	PANTHER:PTHR11165:SF86	InterPro:SKP1	InterPro:SKP1-like_dim_sf
SUPFAM:SSF81382	InterPro:Skp1_comp_dimer	UniParc:UPI000294EB1E	:	:	:

Description

Skp1 [Source:PGSC_GENE;Acc:PGSC0003DMG400039032]

Coordinates

chr11:-:3833076..3833459

Molecular Weight (calculated)

14991.7 Da

IEP (calculated)

4.420

GRAVY (calculated)

-0.699

Length

127 amino acids

Sequence
(BLAST)

001: MVEDDYTLIP LPNMHTQNLI VIIEYTKKHG EKTNSNEEEI KEFDKEFMKD KSYQNMFELV IAANYLHISD LMNLLCQTIA DRIKNKSVKA VRQIFGLIND
101: YTPEEEEKVR EEHTWAHEGN EIDESLD

Best Arabidopsis Sequence Match ( AT4G34210.1 )
(BLAST)

001: MSSKMIVLMS SDGQSFEVEE AVAIQSQTIA HMVEDDCVAD GIPLANVESK ILVKVIEYCK KHHVDEANPI SEEDLNNWDE KFMDLEQSTI FELILAANYL
101: NIKSLLDLTC QTVADMIKGK TPEEIRSTFN IENDFTPEEE EAVRKENQWA FE

Arabidopsis Description

ASK11SKP1-like protein 11 [Source:UniProtKB/Swiss-Prot;Acc:O49484]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.