Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g043270.1.1 | Tomato | cytosol | 63.81 | 72.04 |
| KRH17482 | Soybean | cytosol | 52.38 | 50.0 |
| PGSC0003DMT400068720 | Potato | cytosol | 69.52 | 48.99 |
| PGSC0003DMT400068727 | Potato | cytosol | 67.62 | 47.33 |
| PGSC0003DMT400068726 | Potato | cytosol | 63.81 | 44.67 |
| PGSC0003DMT400024783 | Potato | cytosol | 60.0 | 42.0 |
| PGSC0003DMT400015825 | Potato | cytosol | 60.0 | 40.38 |
| PGSC0003DMT400015827 | Potato | cytosol | 56.19 | 37.34 |
| PGSC0003DMT400090072 | Potato | cytosol | 36.19 | 37.25 |
| PGSC0003DMT400088079 | Potato | cytosol | 39.05 | 35.65 |
| PGSC0003DMT400085217 | Potato | cytosol | 40.0 | 32.31 |
| PGSC0003DMT400086770 | Potato | cytosol | 37.14 | 30.95 |
| PGSC0003DMT400085417 | Potato | cytosol | 34.29 | 28.57 |
| PGSC0003DMT400093573 | Potato | cytosol | 39.05 | 27.15 |
| PGSC0003DMT400087694 | Potato | cytosol | 38.1 | 26.67 |
| PGSC0003DMT400093419 | Potato | cytosol | 38.1 | 26.49 |
| PGSC0003DMT400090609 | Potato | cytosol | 38.1 | 26.49 |
| PGSC0003DMT400088220 | Potato | cytosol | 37.14 | 25.83 |
| PGSC0003DMT400088820 | Potato | cytosol | 37.14 | 25.83 |
| PGSC0003DMT400038385 | Potato | cytosol | 37.14 | 25.83 |
| PGSC0003DMT400091657 | Potato | cytosol | 38.1 | 25.32 |
| PGSC0003DMT400096238 | Potato | cytosol | 35.24 | 24.83 |
| PGSC0003DMT400097239 | Potato | cytosol | 35.24 | 24.5 |
| PGSC0003DMT400088621 | Potato | cytosol | 25.71 | 23.08 |
| PGSC0003DMT400095953 | Potato | cytosol | 34.29 | 22.78 |
| PGSC0003DMT400019185 | Potato | cytosol | 39.05 | 22.78 |
| PGSC0003DMT400093338 | Potato | cytosol | 33.33 | 20.83 |
| PGSC0003DMT400089461 | Potato | cytosol | 22.86 | 18.9 |
| PGSC0003DMT400019237 | Potato | cytosol | 29.52 | 16.4 |
| PGSC0003DMT400096074 | Potato | cytosol | 24.76 | 15.12 |
| VIT_00s0349g00030.t01 | Wine grape | cytosol | 50.48 | 2.08 |
Protein Annotations
| Gene3D:3.30.710.10 | MapMan:35.1 | GO:GO:0005575 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0019538 | UniProt:M1DUT1 |
| PFAM:PF03931 | EnsemblPlantsGene:PGSC0003DMG400044316 | PGSC:PGSC0003DMG400044316 | EnsemblPlants:PGSC0003DMT400094745 | PANTHER:PTHR11165 | PANTHER:PTHR11165:SF88 |
| InterPro:SKP1-like | InterPro:SKP1/BTB/POZ_sf | SMART:SM00512 | SUPFAM:SSF54695 | InterPro:Skp1_comp_POZ | TMHMM:TMhelix |
| UniParc:UPI000296E608 | : | : | : | : | : |
Description
SKP1-like 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400044316]
Coordinates
chr6:-:19660467..19660784
Molecular Weight (calculated)
12223.8 Da
IEP (calculated)
4.824
GRAVY (calculated)
-0.001
Length
105 amino acids
Sequence
(BLAST)
(BLAST)
001: MIILSSFDGD TFEVDEAVAL ESQTIKHMIE DDYANTIIPL PNVTRNILTK FIDYSKRRVE VPKAKYKTAK EDLKTFNAEF VKVDQSTLFN LMLVWIILNL
101: YVYLN
101: YVYLN
001: MSTVRKITLK SSDGENFEID EAVALESQTI KHMIEDDCTD NGIPLPNVTS KILSKVIEYC KRHVEAAEKS ETTADAAAAT TTTTVASGSS DEDLKTWDSE
101: FIKVDQGTLF DLILAANYLN IKGLLDLTCQ TVADMIKGKT PEEIRKTFNI KNDFTPEEEE EVRRENQWAF E
101: FIKVDQGTLF DLILAANYLN IKGLLDLTCQ TVADMIKGKT PEEIRKTFNI KNDFTPEEEE EVRRENQWAF E
Arabidopsis Description
SKP1BSKP1-like protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9FHW7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.