Factsheet for PGSC0003DMT400015825

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g111650.2.1	Tomato	cytosol	99.36	99.36
PGSC0003DMT400024783	Potato	cytosol	85.26	88.67
PGSC0003DMT400068727	Potato	cytosol	84.62	88.0
PGSC0003DMT400015827	Potato	cytosol	87.18	86.08
PGSC0003DMT400068720	Potato	cytosol	78.85	82.55
PGSC0003DMT400068726	Potato	cytosol	76.92	80.0
GSMUA_Achr8P13060_001	Banana	cytosol	80.13	74.4
PGSC0003DMT400094745	Potato	cytosol	40.38	60.0
PGSC0003DMT400088621	Potato	cytosol	44.87	59.83
PGSC0003DMT400038385	Potato	cytosol	56.41	58.28
PGSC0003DMT400090609	Potato	cytosol	56.41	58.28
PGSC0003DMT400088820	Potato	cytosol	55.77	57.62
PGSC0003DMT400093573	Potato	cytosol	55.77	57.62
PGSC0003DMT400088220	Potato	cytosol	54.49	56.29
PGSC0003DMT400097239	Potato	cytosol	53.85	55.63
PGSC0003DMT400087694	Potato	cytosol	51.92	54.0
PGSC0003DMT400093419	Potato	cytosol	51.92	53.64
PGSC0003DMT400085217	Potato	cytosol	44.23	53.08
PGSC0003DMT400086770	Potato	cytosol	41.03	50.79
PGSC0003DMT400096238	Potato	cytosol	47.44	49.66
PGSC0003DMT400088079	Potato	cytosol	36.54	49.57
PGSC0003DMT400085417	Potato	cytosol	39.74	49.21
PGSC0003DMT400093338	Potato	cytosol	50.64	47.02
PGSC0003DMT400091657	Potato	cytosol	46.79	46.2
PGSC0003DMT400095953	Potato	cytosol	46.79	46.2
PGSC0003DMT400090072	Potato	cytosol	30.13	46.08
PGSC0003DMT400089461	Potato	cytosol	35.9	44.09
PGSC0003DMT400019185	Potato	cytosol	47.44	41.11
PGSC0003DMT400096074	Potato	cytosol	42.31	38.37
PGSC0003DMT400019237	Potato	cytosol	40.38	33.33

Protein Annotations

EntrezGene:102601988	MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	UniProt:M1A6N3	PFAM:PF01466	PFAM:PF03931
EnsemblPlantsGene:PGSC0003DMG400006184	PGSC:PGSC0003DMG400006184	EnsemblPlants:PGSC0003DMT400015825	PIRSF:PIRSF028729	PANTHER:PTHR11165	PANTHER:PTHR11165:SF88
InterPro:SKP1	InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf	SMART:SM00512	SUPFAM:SSF54695
SUPFAM:SSF81382	InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	UniParc:UPI0002957348	RefSeq:XP_006359705.1	SEG:seg

Description

Skp1 [Source:PGSC_GENE;Acc:PGSC0003DMG400006184]

Coordinates

chr1:+:87621468..87623667

Molecular Weight (calculated)

17524.7 Da

IEP (calculated)

4.318

GRAVY (calculated)

-0.372

Length

156 amino acids

Sequence
(BLAST)

001: MSSPTKILLK SSDGEVFEVD EAVALESQTI KHLIEDDCAG SNIPLPNVTS KILAKVIEYS KRHVEASSKT EDKAAEDELK VFDAEFVKVD QGTLFDLILA
101: ANYLNIKSLL DLTCQTVADM IKGKTPEEIR KTFNIKNDFT PEEEEEVRRE NAWAFE

Best Arabidopsis Sequence Match ( AT5G42190.1 )
(BLAST)

001: MSTVRKITLK SSDGENFEID EAVALESQTI KHMIEDDCTD NGIPLPNVTS KILSKVIEYC KRHVEAAEKS ETTADAAAAT TTTTVASGSS DEDLKTWDSE
101: FIKVDQGTLF DLILAANYLN IKGLLDLTCQ TVADMIKGKT PEEIRKTFNI KNDFTPEEEE EVRRENQWAF E

Arabidopsis Description

SKP1BSKP1-like protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9FHW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.