Factsheet for PGSC0003DMT400086770

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

golgi 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400088079	Potato	cytosol	80.16	87.83
PGSC0003DMT400085417	Potato	cytosol	84.13	84.13
PGSC0003DMT400085217	Potato	cytosol	84.13	81.54
PGSC0003DMT400088220	Potato	cytosol	91.27	76.16
PGSC0003DMT400038385	Potato	cytosol	90.48	75.5
PGSC0003DMT400090609	Potato	cytosol	90.48	75.5
PGSC0003DMT400088820	Potato	cytosol	89.68	74.83
PGSC0003DMT400093573	Potato	cytosol	89.68	74.83
PGSC0003DMT400087694	Potato	cytosol	85.71	72.0
PGSC0003DMT400093419	Potato	cytosol	84.92	70.86
PGSC0003DMT400097239	Potato	cytosol	84.92	70.86
PGSC0003DMT400088621	Potato	cytosol	64.29	69.23
Solyc03g093190.1.1	Tomato	cytosol	61.11	63.11
PGSC0003DMT400096238	Potato	cytosol	69.05	58.39
PGSC0003DMT400093338	Potato	cytosol	67.46	50.6
PGSC0003DMT400068727	Potato	cytosol	51.59	43.33
PGSC0003DMT400024783	Potato	cytosol	50.0	42.0
HORVU5Hr1G110790.1	Barley	cytosol	34.13	41.75
TraesCS4A01G366400.1	Wheat	cytosol	53.97	41.46
PGSC0003DMT400015825	Potato	cytosol	50.79	41.03
TraesCS2D01G560500.1	Wheat	cytosol	53.17	40.85
PGSC0003DMT400068726	Potato	cytosol	48.41	40.67
OQU87046	Sorghum	cytosol	42.86	40.3
PGSC0003DMT400068720	Potato	cytosol	47.62	40.27
TraesCS2D01G560400.1	Wheat	cytosol	52.38	40.24
TraesCS2D01G560700.1	Wheat	cytosol	52.38	40.24
PGSC0003DMT400090072	Potato	cytosol	32.54	40.2
TraesCS5B01G474100.1	Wheat	cytosol	51.59	40.12
TraesCS3B01G566400.1	Wheat	cytosol	45.24	39.86
TraesCS2D01G560300.1	Wheat	cytosol	51.59	39.63
TraesCS5A01G462800.1	Wheat	cytosol	42.06	39.55
TraesCS6A01G000300.1	Wheat	cytosol	50.79	39.26
TraesCS6B01G004300.1	Wheat	cytosol	50.79	39.26
TraesCS6D01G045500.1	Wheat	cytosol	52.38	39.05
TraesCS7D01G016900.1	Wheat	cytosol	52.38	39.05
TraesCS5D01G475600.1	Wheat	cytosol	53.97	38.86
TraesCS2B01G590600.1	Wheat	cytosol	53.17	38.51
TraesCS4A01G472600.1	Wheat	cytosol	52.38	38.37
TraesCS7A01G020600.1	Wheat	cytosol	52.38	38.37
TraesCS2D01G420100.1	Wheat	cytosol	53.17	38.29
TraesCS3B01G308600.1	Wheat	cytosol	49.21	38.04
PGSC0003DMT400015827	Potato	cytosol	47.62	37.97
TraesCS6B01G053400.1	Wheat	cytosol	41.27	37.96
TraesCS5D01G475400.1	Wheat	golgi, plastid, unclear	52.38	37.71
TraesCS7D01G194900.1	Wheat	cytosol	52.38	37.71
Os11t0456300-01	Rice	plasma membrane	51.59	37.57
EES09697	Sorghum	cytosol	52.38	37.5
Zm00001d049230_P001	Maize	mitochondrion	52.38	37.5
EES06093	Sorghum	cytosol	50.0	37.28
TraesCS3D01G509600.1	Wheat	cytosol	50.79	37.21
PGSC0003DMT400094745	Potato	cytosol	30.95	37.14
TraesCS6D01G001600.1	Wheat	cytosol	51.59	37.14
TraesCS7B01G098900.1	Wheat	cytosol	51.59	37.14
HORVU5Hr1G110810.1	Barley	cytosol	44.44	36.36
EES13900	Sorghum	cytosol	48.41	36.31
PGSC0003DMT400096074	Potato	cytosol	49.21	36.05
HORVU5Hr1G110840.1	Barley	cytosol	50.0	35.8
TraesCS6D01G044400.1	Wheat	cytosol	38.1	35.56
HORVU5Hr1G110850.1	Barley	cytosol	50.0	35.39
TraesCS7A01G498800.1	Wheat	cytosol	46.03	35.15
TraesCS4A01G379700.1	Wheat	cytosol	41.27	34.9
Os09t0539500-01	Rice	cytosol, plasma membrane, plastid	48.41	34.86
HORVU5Hr1G110720.2	Barley	cytosol	49.21	34.83
TraesCS2B01G442100.1	Wheat	mitochondrion	49.21	34.83
HORVU5Hr1G090360.1	Barley	cytosol	48.41	34.27
HORVU5Hr1G110800.1	Barley	cytosol	48.41	34.27
HORVU5Hr1G110820.2	Barley	cytosol	48.41	34.27
TraesCS2A01G522300.1	Wheat	cytosol	47.62	34.09
HORVU5Hr1G110830.3	Barley	cytosol	48.41	34.08
HORVU5Hr1G110760.2	Barley	cytosol	42.86	33.96
TraesCS2D01G524400.1	Wheat	cytosol	43.65	33.95
HORVU2Hr1G115410.2	Barley	cytosol	45.24	33.93
TraesCS6D01G002600.1	Wheat	cytosol	46.83	33.71
TraesCS4B01G337400.1	Wheat	cytosol	42.06	33.54
TraesCS7A01G193600.1	Wheat	cytosol	35.71	33.09
EER99267	Sorghum	cytosol	45.24	32.95
HORVU2Hr1G115400.1	Barley	cytosol	46.03	32.77
HORVU2Hr1G115420.1	Barley	cytosol	46.03	32.77
TraesCS5B01G165700.1	Wheat	cytosol	45.24	32.57
TraesCS6B01G008800.1	Wheat	cytosol	45.24	32.57
HORVU7Hr1G099950.1	Barley	cytosol	44.44	32.37
HORVU2Hr1G115380.1	Barley	cytosol	46.03	32.22
TraesCS7D01G545000.2	Wheat	cytosol	43.65	32.16
HORVU7Hr1G099840.1	Barley	cytosol	44.44	32.0
HORVU7Hr1G099860.2	Barley	cytosol, mitochondrion, nucleus	44.44	32.0
TraesCS3A01G374400.1	Wheat	cytosol	41.27	31.9
HORVU3Hr1G089860.3	Barley	cytosol	45.24	31.67
HORVU7Hr1G103140.2	Barley	cytosol	45.24	31.67
TraesCS5D01G173200.1	Wheat	cytosol	45.24	31.67
TraesCS7D01G544900.1	Wheat	cytosol	35.71	31.47
TraesCS6D01G020500.1	Wheat	cytosol	38.89	31.41
TraesCS5A01G168900.1	Wheat	cytosol	45.24	31.32
TraesCS3B01G406500.1	Wheat	cytosol	40.48	31.29
TraesCS7B01G492300.1	Wheat	cytosol	43.65	31.25
CDY03015	Canola	cytosol	37.3	31.13
HORVU7Hr1G002220.1	Barley	cytosol, plastid	51.59	30.95
TraesCS5A01G093500.1	Wheat	cytosol	40.48	30.91
TraesCS5D01G105800.1	Wheat	cytosol	35.71	30.82
TraesCS6A01G017300.1	Wheat	cytosol	38.1	30.77
TraesCS7A01G565800.1	Wheat	cytosol	42.86	30.68
TraesCS7B01G492200.1	Wheat	cytosol	42.86	30.68
TraesCS7B01G492500.1	Wheat	cytosol	42.86	30.68
TraesCS5D01G379900.1	Wheat	cytosol	35.71	30.61
VIT_15s0045g00490.t01	Wine grape	cytosol	36.51	30.46
GSMUA_Achr4P25740_001	Banana	cytosol	35.71	30.41
PGSC0003DMT400095953	Potato	cytosol	38.1	30.38
TraesCS5B01G099600.1	Wheat	cytosol	42.06	30.29
Os08t0375500-00	Rice	cytosol	40.48	30.18
PGSC0003DMT400019185	Potato	cytosol	42.86	30.0
TraesCS2A01G574500.1	Wheat	cytosol	39.68	29.76
Os08t0375700-00	Rice	cytosol	39.68	29.59
TraesCS7B01G492400.1	Wheat	cytosol	41.27	29.55
HORVU7Hr1G099790.1	Barley	cytosol, plastid	46.03	29.44
Os09t0273800-01	Rice	cytosol	38.89	29.34
Zm00001d007590_P001	Maize	cytosol	43.65	29.26
TraesCS7A01G565700.1	Wheat	cytosol	39.68	29.24
Os07t0625600-00	Rice	cytosol	40.48	28.65
TraesCS6A01G016900.1	Wheat	cytosol	40.48	28.65
Zm00001d007659_P001	Maize	cytosol	43.65	28.65
Os09t0412050-00	Rice	cytosol	38.1	28.57
TraesCS6B01G024700.1	Wheat	cytosol	38.1	28.57
Zm00001d007589_P001	Maize	cytosol	43.65	28.35
Os07t0625500-01	Rice	cytosol	38.89	28.16
Zm00001d007586_P001	Maize	cytosol	42.86	28.12
Os09t0274800-00	Rice	cytosol	38.1	27.91
PGSC0003DMT400091657	Potato	cytosol	34.92	27.85
TraesCS5B01G372700.1	Wheat	cytosol	35.71	27.78
VIT_10s0003g05820.t01	Wine grape	cytosol	35.71	27.78
TraesCS5D01G176900.1	Wheat	cytosol	42.86	27.55
Zm00001d022618_P001	Maize	cytosol	37.3	27.49
VIT_19s0085g00190.t01	Wine grape	cytosol	34.13	27.39
TraesCS3B01G092200.1	Wheat	cytosol	35.71	27.11
TraesCS5B01G169700.1	Wheat	cytosol	42.86	27.0
TraesCS5A01G172300.1	Wheat	cytosol	42.06	26.9
PGSC0003DMT400089461	Potato	cytosol	26.98	26.77
TraesCS1D01G201900.1	Wheat	cytosol	34.92	26.51
VIT_19s0085g00180.t01	Wine grape	cytosol	31.75	26.32
TraesCS3D01G077800.1	Wheat	cytosol	34.92	26.19
Os06t0113800-00	Rice	cytosol	34.13	25.9
HORVU5Hr1G092210.1	Barley	cytosol	32.54	25.47
Os02t0101600-00	Rice	cytosol	32.54	25.47
OQU76826	Sorghum	cytosol	34.92	25.43
GSMUA_Achr4P25750_001	Banana	cytosol	34.92	24.86
KRH13748	Soybean	cytosol	34.92	24.04
PGSC0003DMT400019237	Potato	cytosol	35.71	23.81
Os09t0275200-01	Rice	cytosol	29.37	23.12
Zm00001d042677_P001	Maize	plastid	46.03	21.97
Os07t0624900-00	Rice	cytosol	33.33	21.0
Os10t0438100-00	Rice	cytosol	35.71	20.45
TraesCS1B01G156000.1	Wheat	cytosol	37.3	19.92
TraesCS1A01G129800.1	Wheat	cytosol	36.51	19.49
TraesCS1D01G138400.1	Wheat	cytosol	36.51	19.33
HORVU1Hr1G035930.1	Barley	cytosol	35.71	18.59
EER94185	Sorghum	cytosol	30.16	18.01
HORVU3Hr1G074970.1	Barley	cytosol, nucleus	32.54	16.27
OQU90298	Sorghum	cytosol	34.92	12.61
TraesCS3B01G340200.1	Wheat	cytosol	31.75	9.59
TraesCS3A01G297000.1	Wheat	cytosol	35.71	8.49
TraesCS3D01G305500.1	Wheat	cytosol	34.13	8.41
TraesCS3B01G340100.1	Wheat	nucleus	29.37	7.12

Protein Annotations

EntrezGene:107060603	MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	UniProt:M1DCG3	PFAM:PF01466	PFAM:PF03931
EnsemblPlantsGene:PGSC0003DMG400036341	PGSC:PGSC0003DMG400036341	EnsemblPlants:PGSC0003DMT400086770	PIRSF:PIRSF028729	PANTHER:PTHR11165	PANTHER:PTHR11165:SF88
InterPro:SKP1	InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf	SMART:SM00512	SUPFAM:SSF54695
SUPFAM:SSF81382	InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	UniParc:UPI000294A157	RefSeq:XP_015164133.1	:

Description

SKP1 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400036341]

Coordinates

chr2:+:34623182..34623562

Molecular Weight (calculated)

14532.8 Da

IEP (calculated)

6.676

GRAVY (calculated)

-0.169

Length

126 amino acids

Sequence
(BLAST)

001: MSSSTKFLTL KTYDGKEFVL DEVIVVRSQT IKTMVEDDCV SSVIPLPNVH SKTMTKVIEY WKKHSEEGVS KDMLMDFDKA FVKVHHSILH ALILVVNFLN
101: DKEILDMMCQ EVADRIKGKT QEEIRK

Best Arabidopsis Sequence Match ( AT1G75950.1 )
(BLAST)

001: MSAKKIVLKS SDGESFEVEE AVALESQTIA HMVEDDCVDN GVPLPNVTSK ILAKVIEYCK RHVEAAASKA EAVEGAATSD DDLKAWDADF MKIDQATLFE
101: LILAANYLNI KNLLDLTCQT VADMIKGKTP EEIRTTFNIK NDFTPEEEEE VRRENQWAFE

Arabidopsis Description

SKP1ASKP1-like protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q39255]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.