Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d007590_P001 | Maize | cytosol | 58.33 | 81.91 |
| Zm00001d007589_P001 | Maize | cytosol | 59.85 | 81.44 |
| Zm00001d007659_P001 | Maize | cytosol | 59.09 | 81.25 |
| Zm00001d007586_P001 | Maize | cytosol | 59.09 | 81.25 |
| OQU87046 | Sorghum | cytosol | 37.12 | 73.13 |
| EES13900 | Sorghum | cytosol | 45.45 | 71.43 |
| EES06093 | Sorghum | cytosol | 44.32 | 69.23 |
| TraesCS7D01G016900.1 | Wheat | cytosol | 43.56 | 68.05 |
| Zm00001d049230_P001 | Maize | mitochondrion | 44.7 | 67.05 |
| TraesCS7A01G020600.1 | Wheat | cytosol | 43.56 | 66.86 |
| TraesCS4A01G472600.1 | Wheat | cytosol | 43.18 | 66.28 |
| CDY03015 | Canola | cytosol | 32.58 | 56.95 |
| PGSC0003DMT400088621 | Potato | cytosol | 23.86 | 53.85 |
| PGSC0003DMT400093573 | Potato | cytosol | 30.68 | 53.64 |
| PGSC0003DMT400090609 | Potato | cytosol | 30.68 | 53.64 |
| VIT_19s0085g00180.t01 | Wine grape | cytosol | 30.68 | 53.29 |
| PGSC0003DMT400038385 | Potato | cytosol | 30.3 | 52.98 |
| Solyc03g112710.1.1 | Tomato | cytosol | 30.3 | 52.98 |
| HORVU7Hr1G002220.1 | Barley | cytosol, plastid | 42.05 | 52.86 |
| PGSC0003DMT400087694 | Potato | cytosol | 29.92 | 52.67 |
| PGSC0003DMT400088820 | Potato | cytosol | 29.55 | 51.66 |
| PGSC0003DMT400097239 | Potato | cytosol | 28.79 | 50.33 |
| PGSC0003DMT400088220 | Potato | cytosol | 28.41 | 49.67 |
| PGSC0003DMT400093419 | Potato | cytosol | 28.41 | 49.67 |
| PGSC0003DMT400085217 | Potato | cytosol | 23.86 | 48.46 |
| Zm00001d022618_P001 | Maize | cytosol | 31.06 | 47.95 |
| Solyc11g008230.1.1 | Tomato | cytosol | 28.41 | 47.47 |
| PGSC0003DMT400090072 | Potato | cytosol | 18.18 | 47.06 |
| PGSC0003DMT400088079 | Potato | cytosol | 20.45 | 46.96 |
| PGSC0003DMT400086770 | Potato | cytosol | 21.97 | 46.03 |
| GSMUA_Achr4P25740_001 | Banana | cytosol | 25.76 | 45.95 |
| PGSC0003DMT400095953 | Potato | cytosol | 27.27 | 45.57 |
| PGSC0003DMT400091657 | Potato | cytosol | 26.89 | 44.94 |
| VIT_10s0003g05820.t01 | Wine grape | cytosol | 27.27 | 44.44 |
| VIT_15s0045g00490.t01 | Wine grape | cytosol | 25.38 | 44.37 |
| PGSC0003DMT400019185 | Potato | cytosol | 29.92 | 43.89 |
| PGSC0003DMT400085417 | Potato | cytosol | 20.83 | 43.65 |
| Solyc11g008400.1.1 | Tomato | cytosol | 29.55 | 43.33 |
| Solyc03g093190.1.1 | Tomato | cytosol | 19.7 | 42.62 |
| PGSC0003DMT400096238 | Potato | cytosol | 23.86 | 42.28 |
| PGSC0003DMT400089461 | Potato | cytosol | 19.7 | 40.94 |
| GSMUA_Achr4P25750_001 | Banana | cytosol | 27.27 | 40.68 |
| VIT_19s0085g00190.t01 | Wine grape | cytosol | 23.86 | 40.13 |
| Solyc11g008240.1.1 | Tomato | cytosol | 23.86 | 39.87 |
| PGSC0003DMT400093338 | Potato | cytosol | 24.62 | 38.69 |
| KRH13748 | Soybean | cytosol | 24.24 | 34.97 |
| PGSC0003DMT400096074 | Potato | cytosol | 21.59 | 33.14 |
| PGSC0003DMT400019237 | Potato | cytosol | 23.48 | 32.8 |
| Solyc11g008420.1.1 | Tomato | cytosol | 21.21 | 29.63 |
Protein Annotations
| MapMan:19.2.2.8.1.1 | Gene3D:3.30.710.10 | UniProt:A0A1D6N622 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 | ProteinID:ONM36046.1 | PFAM:PF01466 | PFAM:PF03931 |
| PANTHER:PTHR11165 | PANTHER:PTHR11165:SF24 | InterPro:SKP1-like | InterPro:SKP1-like_dim_sf | InterPro:SKP1/BTB/POZ_sf | SMART:SM00512 |
| SUPFAM:SSF54695 | SUPFAM:SSF81382 | InterPro:Skp1_comp_POZ | InterPro:Skp1_comp_dimer | UniParc:UPI00084468D3 | EnsemblPlantsGene:Zm00001d042677 |
| EnsemblPlants:Zm00001d042677_P001 | EnsemblPlants:Zm00001d042677_T001 | SEG:seg | : | : | : |
Description
SKP1-like protein 1A
Coordinates
chr3:-:176515269..176516610
Molecular Weight (calculated)
29604.5 Da
IEP (calculated)
6.771
GRAVY (calculated)
-0.299
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSAPTVSYR TAAVVSPPFL SSRPSLYIRT CRIVDRSWPR ARVASLPPYP RLPTPPARGT AKKMLTLRSS DYEEFEVEEA VMMKSEIIRF MIEDDCANNV
101: IPLPNVNSKT LALVIEYCNK HVHAAAKPAD DDSDAAETTS ASSAGGGGEV DLKKWDAEFV KVATATLFDL IMAANYLDIK GLQDLTCRAV VDMIQGKSPE
201: EIRKTFNIKN DLTKEEEEAI RSENSWAFER YPNKKCNLSL EIMFLLNFRT FKSEVILSSA HKRM
101: IPLPNVNSKT LALVIEYCNK HVHAAAKPAD DDSDAAETTS ASSAGGGGEV DLKKWDAEFV KVATATLFDL IMAANYLDIK GLQDLTCRAV VDMIQGKSPE
201: EIRKTFNIKN DLTKEEEEAI RSENSWAFER YPNKKCNLSL EIMFLLNFRT FKSEVILSSA HKRM
001: MSTVRKITLK SSDGENFEID EAVALESQTI KHMIEDDCTD NGIPLPNVTS KILSKVIEYC KRHVEAAEKS ETTADAAAAT TTTTVASGSS DEDLKTWDSE
101: FIKVDQGTLF DLILAANYLN IKGLLDLTCQ TVADMIKGKT PEEIRKTFNI KNDFTPEEEE EVRRENQWAF E
101: FIKVDQGTLF DLILAANYLN IKGLLDLTCQ TVADMIKGKT PEEIRKTFNI KNDFTPEEEE EVRRENQWAF E
Arabidopsis Description
SKP1BSKP1-like protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9FHW7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.