Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d007586_P001 | Maize | cytosol | 97.42 | 98.44 |
| Zm00001d007659_P001 | Maize | cytosol | 96.91 | 97.92 |
| Zm00001d007590_P001 | Maize | cytosol | 94.85 | 97.87 |
| OQU87046 | Sorghum | cytosol | 50.0 | 72.39 |
| EES13900 | Sorghum | cytosol | 59.79 | 69.05 |
| EES06093 | Sorghum | cytosol | 59.28 | 68.05 |
| TraesCS7D01G016900.1 | Wheat | cytosol | 57.22 | 65.68 |
| Zm00001d049230_P001 | Maize | mitochondrion | 58.76 | 64.77 |
| TraesCS7A01G020600.1 | Wheat | cytosol | 57.22 | 64.53 |
| TraesCS4A01G472600.1 | Wheat | cytosol | 56.7 | 63.95 |
| Zm00001d042677_P001 | Maize | plastid | 81.44 | 59.85 |
| CDY03015 | Canola | cytosol | 43.3 | 55.63 |
| VIT_19s0085g00180.t01 | Wine grape | cytosol | 42.78 | 54.61 |
| PGSC0003DMT400088621 | Potato | cytosol | 31.96 | 52.99 |
| PGSC0003DMT400093573 | Potato | cytosol | 39.69 | 50.99 |
| PGSC0003DMT400090609 | Potato | cytosol | 39.69 | 50.99 |
| HORVU7Hr1G002220.1 | Barley | cytosol, plastid | 54.64 | 50.48 |
| PGSC0003DMT400038385 | Potato | cytosol | 39.18 | 50.33 |
| Solyc03g112710.1.1 | Tomato | cytosol | 39.18 | 50.33 |
| PGSC0003DMT400087694 | Potato | cytosol | 38.66 | 50.0 |
| PGSC0003DMT400088820 | Potato | cytosol | 38.14 | 49.01 |
| PGSC0003DMT400093419 | Potato | cytosol | 37.11 | 47.68 |
| Zm00001d022618_P001 | Maize | cytosol | 41.75 | 47.37 |
| PGSC0003DMT400088220 | Potato | cytosol | 36.6 | 47.02 |
| PGSC0003DMT400097239 | Potato | cytosol | 36.6 | 47.02 |
| Solyc11g008230.1.1 | Tomato | cytosol | 38.14 | 46.84 |
| PGSC0003DMT400085217 | Potato | cytosol | 30.93 | 46.15 |
| PGSC0003DMT400090072 | Potato | cytosol | 24.23 | 46.08 |
| PGSC0003DMT400088079 | Potato | cytosol | 26.8 | 45.22 |
| PGSC0003DMT400095953 | Potato | cytosol | 36.6 | 44.94 |
| VIT_10s0003g05820.t01 | Wine grape | cytosol | 37.11 | 44.44 |
| PGSC0003DMT400091657 | Potato | cytosol | 36.08 | 44.3 |
| GSMUA_Achr4P25740_001 | Banana | cytosol | 33.51 | 43.92 |
| PGSC0003DMT400086770 | Potato | cytosol | 28.35 | 43.65 |
| VIT_15s0045g00490.t01 | Wine grape | cytosol | 33.51 | 43.05 |
| PGSC0003DMT400019185 | Potato | cytosol | 39.18 | 42.22 |
| Solyc03g093190.1.1 | Tomato | cytosol | 26.29 | 41.8 |
| Solyc11g008400.1.1 | Tomato | cytosol | 38.66 | 41.67 |
| PGSC0003DMT400085417 | Potato | cytosol | 26.8 | 41.27 |
| PGSC0003DMT400089461 | Potato | cytosol | 26.8 | 40.94 |
| PGSC0003DMT400096238 | Potato | cytosol | 31.44 | 40.94 |
| GSMUA_Achr4P25750_001 | Banana | cytosol | 36.08 | 39.55 |
| VIT_19s0085g00190.t01 | Wine grape | cytosol | 31.96 | 39.49 |
| Solyc11g008240.1.1 | Tomato | cytosol | 31.44 | 38.61 |
| PGSC0003DMT400093338 | Potato | cytosol | 31.96 | 36.9 |
| PGSC0003DMT400096074 | Potato | cytosol | 29.9 | 33.72 |
| KRH13748 | Soybean | cytosol | 30.41 | 32.24 |
| PGSC0003DMT400019237 | Potato | cytosol | 30.41 | 31.22 |
| Solyc11g008420.1.1 | Tomato | cytosol | 28.35 | 29.1 |
Protein Annotations
| MapMan:19.2.2.8.1.1 | Gene3D:3.30.710.10 | UniProt:A0A1D6F7C0 | GO:GO:0005575 | GO:GO:0006511 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0019538 |
| ProteinID:ONM27134.1 | PFAM:PF01466 | PFAM:PF03931 | PIRSF:PIRSF028729 | PANTHER:PTHR11165 | PANTHER:PTHR11165:SF24 |
| InterPro:SKP1 | InterPro:SKP1-like | InterPro:SKP1-like_dim_sf | InterPro:SKP1/BTB/POZ_sf | SMART:SM00512 | SUPFAM:SSF54695 |
| SUPFAM:SSF81382 | InterPro:Skp1_comp_POZ | InterPro:Skp1_comp_dimer | TMHMM:TMhelix | UniParc:UPI0008431FBE | EnsemblPlantsGene:Zm00001d007589 |
| EnsemblPlants:Zm00001d007589_P001 | EnsemblPlants:Zm00001d007589_T001 | SEG:seg | : | : | : |
Description
SKP1-like protein 1A
Coordinates
chr2:-:235722926..235723510
Molecular Weight (calculated)
21487.0 Da
IEP (calculated)
4.423
GRAVY (calculated)
0.030
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEKKMLTLR SSDCEEFEVE EAVLMKSEII RFMIEDDCAD NVIPLPNVNS KTLALVIEYC NKHVHADAAE TTSASSAGGG GEVDLKKWDA EFVKVAPATL
101: FDLIMAANYL DIKGLQGLTC RAVVDMIQGK SPEEIRKTFN IKNDLTKEEE EAIRSENSWA FDPLPVRSSG PRWLTLLLAL ISMASLLVCS YLLI
101: FDLIMAANYL DIKGLQGLTC RAVVDMIQGK SPEEIRKTFN IKNDLTKEEE EAIRSENSWA FDPLPVRSSG PRWLTLLLAL ISMASLLVCS YLLI
001: MSTVRKITLK SSDGENFEID EAVALESQTI KHMIEDDCTD NGIPLPNVTS KILSKVIEYC KRHVEAAEKS ETTADAAAAT TTTTVASGSS DEDLKTWDSE
101: FIKVDQGTLF DLILAANYLN IKGLLDLTCQ TVADMIKGKT PEEIRKTFNI KNDFTPEEEE EVRRENQWAF E
101: FIKVDQGTLF DLILAANYLN IKGLLDLTCQ TVADMIKGKT PEEIRKTFNI KNDFTPEEEE EVRRENQWAF E
Arabidopsis Description
SKP1BSKP1-like protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9FHW7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.