Factsheet for PGSC0003DMT400087694

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400088079	Potato	cytosol	70.67	92.17
PGSC0003DMT400038385	Potato	cytosol	91.33	90.73
PGSC0003DMT400093573	Potato	cytosol	91.33	90.73
PGSC0003DMT400090609	Potato	cytosol	88.67	88.08
PGSC0003DMT400088820	Potato	cytosol	88.0	87.42
PGSC0003DMT400086770	Potato	cytosol	72.0	85.71
PGSC0003DMT400085217	Potato	cytosol	74.0	85.38
PGSC0003DMT400093419	Potato	cytosol	85.33	84.77
PGSC0003DMT400088220	Potato	cytosol	84.67	84.11
PGSC0003DMT400097239	Potato	cytosol	84.0	83.44
PGSC0003DMT400088621	Potato	cytosol	64.67	82.91
PGSC0003DMT400085417	Potato	cytosol	68.0	80.95
PGSC0003DMT400096238	Potato	cytosol	64.0	64.43
PGSC0003DMT400093338	Potato	cytosol	64.67	57.74
PGSC0003DMT400068727	Potato	cytosol	55.33	55.33
PGSC0003DMT400024783	Potato	cytosol	54.0	54.0
OQU87046	Sorghum	cytosol	47.33	52.99
PGSC0003DMT400068726	Potato	cytosol	52.67	52.67
TraesCS4A01G366400.1	Wheat	cytosol	57.33	52.44
PGSC0003DMT400015825	Potato	cytosol	54.0	51.92
TraesCS2D01G560400.1	Wheat	cytosol	56.67	51.83
TraesCS2D01G560500.1	Wheat	cytosol	56.67	51.83
TraesCS3B01G566400.1	Wheat	cytosol	49.33	51.75
TraesCS2D01G560700.1	Wheat	cytosol	56.0	51.22
TraesCS6A01G000300.1	Wheat	cytosol	55.33	50.92
TraesCS6B01G004300.1	Wheat	cytosol	55.33	50.92
TraesCS5B01G474100.1	Wheat	cytosol	54.67	50.62
TraesCS2D01G560300.1	Wheat	cytosol	55.33	50.61
TraesCS6B01G053400.1	Wheat	cytosol	46.0	50.37
PGSC0003DMT400068720	Potato	cytosol	50.0	50.34
TraesCS7D01G016900.1	Wheat	cytosol	56.67	50.3
TraesCS5A01G462800.1	Wheat	cytosol	44.67	50.0
TraesCS6D01G045500.1	Wheat	cytosol	56.0	49.7
TraesCS4A01G472600.1	Wheat	cytosol	56.67	49.42
TraesCS7A01G020600.1	Wheat	cytosol	56.67	49.42
TraesCS5D01G475600.1	Wheat	cytosol	57.33	49.14
TraesCS3B01G308600.1	Wheat	cytosol	53.33	49.08
TraesCS2B01G590600.1	Wheat	cytosol	56.67	48.85
PGSC0003DMT400015827	Potato	cytosol	51.33	48.73
TraesCS2D01G420100.1	Wheat	cytosol	56.67	48.57
Os11t0456300-01	Rice	plasma membrane	56.0	48.55
EES09697	Sorghum	cytosol	56.67	48.3
Zm00001d049230_P001	Maize	mitochondrion	56.67	48.3
EES13900	Sorghum	cytosol	54.0	48.21
TraesCS5D01G475400.1	Wheat	golgi, plastid, unclear	56.0	48.0
TraesCS6D01G001600.1	Wheat	cytosol	56.0	48.0
TraesCS7D01G194900.1	Wheat	cytosol	56.0	48.0
EES06093	Sorghum	cytosol	54.0	47.93
TraesCS3D01G509600.1	Wheat	cytosol	54.67	47.67
TraesCS7B01G098900.1	Wheat	cytosol	55.33	47.43
TraesCS6D01G044400.1	Wheat	cytosol	42.67	47.41
PGSC0003DMT400090072	Potato	cytosol	32.0	47.06
HORVU5Hr1G110810.1	Barley	cytosol	48.0	46.75
TraesCS7A01G193600.1	Wheat	cytosol	41.33	45.59
TraesCS2B01G442100.1	Wheat	mitochondrion	54.0	45.51
HORVU5Hr1G110840.1	Barley	cytosol	53.33	45.45
Os09t0539500-01	Rice	cytosol, plasma membrane, plastid	52.67	45.14
HORVU2Hr1G115410.2	Barley	cytosol	50.0	44.64
EER99267	Sorghum	cytosol	51.33	44.51
TraesCS2A01G522300.1	Wheat	cytosol	52.0	44.32
TraesCS7A01G498800.1	Wheat	cytosol	48.67	44.24
HORVU5Hr1G110850.1	Barley	cytosol	52.0	43.82
HORVU5Hr1G110760.2	Barley	cytosol	46.0	43.4
HORVU5Hr1G110720.2	Barley	cytosol	51.33	43.26
CDY03015	Canola	cytosol	43.33	43.05
PGSC0003DMT400095953	Potato	cytosol	45.33	43.04
PGSC0003DMT400096074	Potato	cytosol	49.33	43.02
HORVU2Hr1G115400.1	Barley	cytosol	50.67	42.94
HORVU5Hr1G110790.1	Barley	cytosol	29.33	42.72
HORVU5Hr1G090360.1	Barley	cytosol	50.67	42.7
HORVU5Hr1G110800.1	Barley	cytosol	50.67	42.7
HORVU5Hr1G110820.2	Barley	cytosol	50.67	42.7
HORVU5Hr1G110830.3	Barley	cytosol	50.67	42.46
HORVU2Hr1G115420.1	Barley	cytosol	50.0	42.37
HORVU2Hr1G115380.1	Barley	cytosol	50.67	42.22
TraesCS6D01G002600.1	Wheat	cytosol	48.67	41.71
HORVU3Hr1G089860.3	Barley	cytosol	50.0	41.67
HORVU7Hr1G103140.2	Barley	cytosol	50.0	41.67
HORVU7Hr1G099950.1	Barley	cytosol	48.0	41.62
Os09t0273800-01	Rice	cytosol	46.0	41.32
HORVU7Hr1G099840.1	Barley	cytosol	48.0	41.14
HORVU7Hr1G099860.2	Barley	cytosol, mitochondrion, nucleus	48.0	41.14
TraesCS5D01G105800.1	Wheat	cytosol	40.0	41.1
Os08t0375500-00	Rice	cytosol	46.0	40.83
TraesCS5B01G165700.1	Wheat	cytosol	47.33	40.57
PGSC0003DMT400091657	Potato	cytosol	42.67	40.51
TraesCS4B01G337400.1	Wheat	cytosol	42.67	40.51
VIT_15s0045g00490.t01	Wine grape	cytosol	40.67	40.4
Os08t0375700-00	Rice	cytosol	45.33	40.24
Zm00001d007590_P001	Maize	cytosol	50.0	39.89
HORVU7Hr1G002220.1	Barley	cytosol, plastid	55.33	39.52
VIT_19s0085g00180.t01	Wine grape	cytosol	40.0	39.47
TraesCS5D01G173200.1	Wheat	cytosol	47.33	39.44
TraesCS7A01G565800.1	Wheat	cytosol	46.0	39.2
TraesCS7B01G492200.1	Wheat	cytosol	46.0	39.2
TraesCS7B01G492300.1	Wheat	cytosol	46.0	39.2
TraesCS7B01G492500.1	Wheat	cytosol	46.0	39.2
Zm00001d007659_P001	Maize	cytosol	50.0	39.06
TraesCS5A01G168900.1	Wheat	cytosol	47.33	39.01
PGSC0003DMT400019185	Potato	cytosol	46.67	38.89
TraesCS2D01G524400.1	Wheat	cytosol	42.0	38.89
VIT_10s0003g05820.t01	Wine grape	cytosol	42.0	38.89
TraesCS5B01G099600.1	Wheat	cytosol	45.33	38.86
TraesCS5A01G093500.1	Wheat	cytosol	42.67	38.79
Os09t0412050-00	Rice	cytosol	43.33	38.69
Zm00001d007589_P001	Maize	cytosol	50.0	38.66
TraesCS7B01G492400.1	Wheat	cytosol	45.33	38.64
PGSC0003DMT400089461	Potato	cytosol	32.67	38.58
GSMUA_Achr4P25740_001	Banana	cytosol	38.0	38.51
TraesCS7D01G544900.1	Wheat	cytosol	36.67	38.46
Os09t0274800-00	Rice	cytosol	44.0	38.37
PGSC0003DMT400094745	Potato	cytosol	26.67	38.1
Zm00001d007586_P001	Maize	cytosol	48.67	38.02
TraesCS7D01G545000.2	Wheat	cytosol	43.33	38.01
Zm00001d022618_P001	Maize	cytosol	43.33	38.01
Os06t0113800-00	Rice	cytosol	42.0	37.95
TraesCS6A01G016900.1	Wheat	cytosol	44.67	37.64
TraesCS6B01G024700.1	Wheat	cytosol	42.0	37.5
TraesCS5B01G372700.1	Wheat	cytosol	40.0	37.04
TraesCS5D01G176900.1	Wheat	cytosol	48.0	36.73
TraesCS6B01G008800.1	Wheat	cytosol	42.67	36.57
TraesCS3B01G092200.1	Wheat	cytosol	40.0	36.14
TraesCS5D01G379900.1	Wheat	cytosol	35.33	36.05
TraesCS5A01G172300.1	Wheat	cytosol	47.33	36.04
TraesCS5B01G169700.1	Wheat	cytosol	48.0	36.0
Os07t0625600-00	Rice	cytosol	42.67	35.96
TraesCS7A01G565700.1	Wheat	cytosol	40.67	35.67
TraesCS3A01G374400.1	Wheat	cytosol	38.67	35.58
HORVU5Hr1G092210.1	Barley	cytosol	38.0	35.4
TraesCS3D01G077800.1	Wheat	cytosol	39.33	35.12
TraesCS3B01G406500.1	Wheat	cytosol	38.0	34.97
TraesCS2A01G574500.1	Wheat	cytosol	38.67	34.52
TraesCS1D01G201900.1	Wheat	cytosol	38.0	34.34
TraesCS4A01G379700.1	Wheat	cytosol	34.0	34.23
KRH13748	Soybean	cytosol	40.67	33.33
Os07t0625500-01	Rice	cytosol	38.67	33.33
PGSC0003DMT400019237	Potato	cytosol	42.0	33.33
Os09t0275200-01	Rice	cytosol	35.33	33.12
TraesCS6D01G020500.1	Wheat	cytosol	34.0	32.69
VIT_19s0085g00190.t01	Wine grape	cytosol	34.0	32.48
GSMUA_Achr4P25750_001	Banana	cytosol	38.0	32.2
TraesCS6A01G017300.1	Wheat	cytosol	33.33	32.05
OQU76826	Sorghum	cytosol	36.67	31.79
Os07t0624900-00	Rice	cytosol	40.67	30.5
Zm00001d042677_P001	Maize	plastid	52.67	29.92
HORVU7Hr1G099790.1	Barley	cytosol, plastid	38.0	28.93
Os10t0438100-00	Rice	cytosol	40.67	27.73
Os02t0101600-00	Rice	cytosol	29.33	27.33
TraesCS1B01G156000.1	Wheat	cytosol	42.0	26.69
TraesCS1A01G129800.1	Wheat	cytosol	41.33	26.27
TraesCS1D01G138400.1	Wheat	cytosol	41.33	26.05
HORVU1Hr1G035930.1	Barley	cytosol	41.33	25.62
EER94185	Sorghum	cytosol	35.33	25.12
OQU90298	Sorghum	cytosol	40.67	17.48
HORVU3Hr1G074970.1	Barley	cytosol, nucleus	28.67	17.06
TraesCS3B01G340200.1	Wheat	cytosol	38.0	13.67
TraesCS3D01G305500.1	Wheat	cytosol	39.33	11.55
TraesCS3A01G297000.1	Wheat	cytosol	40.0	11.32
TraesCS3B01G340100.1	Wheat	nucleus	36.0	10.38

Protein Annotations

EntrezGene:102587699	MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	UniProt:M1DEC8	PFAM:PF01466	PFAM:PF03931
EnsemblPlantsGene:PGSC0003DMG400037265	PGSC:PGSC0003DMG400037265	EnsemblPlants:PGSC0003DMT400087694	PIRSF:PIRSF028729	PANTHER:PTHR11165	PANTHER:PTHR11165:SF89
InterPro:SKP1	InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf	SMART:SM00512	SUPFAM:SSF54695
SUPFAM:SSF81382	InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	UniParc:UPI0002960CEA	RefSeq:XP_006347116.1	:

Description

Skp1 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400037265]

Coordinates

chr2:+:34642677..34643129

Molecular Weight (calculated)

17238.7 Da

IEP (calculated)

5.095

GRAVY (calculated)

-0.372

Length

150 amino acids

Sequence
(BLAST)

001: MSSSTKLLTL KTCDGKEFVL DESIAVRSQT IKNMVEDDCV SNVIPLPNVH SKTMTKVIEY WKKHSEEDVS KDMLLEFDKA FVKVHHSILH ALILAANFLN
101: NKEILDIMCQ EVANRIKGSP QEIRKEFDIK NDITSEEEEA IRKENAWAFE

Best Arabidopsis Sequence Match ( AT4G34210.1 )
(BLAST)

001: MSSKMIVLMS SDGQSFEVEE AVAIQSQTIA HMVEDDCVAD GIPLANVESK ILVKVIEYCK KHHVDEANPI SEEDLNNWDE KFMDLEQSTI FELILAANYL
101: NIKSLLDLTC QTVADMIKGK TPEEIRSTFN IENDFTPEEE EAVRKENQWA FE

Arabidopsis Description

ASK11SKP1-like protein 11 [Source:UniProtKB/Swiss-Prot;Acc:O49484]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.