Factsheet for TraesCS6D01G020500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G017300.1	Wheat	cytosol	92.31	92.31
TraesCS6B01G024700.1	Wheat	cytosol	78.85	73.21
TraesCS6D01G002600.1	Wheat	cytosol	69.87	62.29
HORVU7Hr1G099950.1	Barley	cytosol	67.95	61.27
HORVU7Hr1G099840.1	Barley	cytosol	67.95	60.57
TraesCS5D01G105800.1	Wheat	cytosol	56.41	60.27
HORVU7Hr1G099860.2	Barley	cytosol, mitochondrion, nucleus	67.31	60.0
TraesCS6D01G001600.1	Wheat	cytosol	63.46	56.57
TraesCS7D01G016900.1	Wheat	cytosol	60.26	55.62
TraesCS2D01G560500.1	Wheat	cytosol	57.05	54.27
TraesCS2D01G560300.1	Wheat	cytosol	56.41	53.66
TraesCS2D01G560400.1	Wheat	cytosol	55.77	53.05
TraesCS2D01G560700.1	Wheat	cytosol	55.13	52.44
HORVU7Hr1G099790.1	Barley	cytosol, plastid	66.03	52.28
TraesCS6D01G045500.1	Wheat	cytosol	55.77	51.48
TraesCS5D01G475600.1	Wheat	cytosol	57.69	51.43
TraesCS5D01G475400.1	Wheat	golgi, plastid, unclear	57.69	51.43
TraesCS2D01G420100.1	Wheat	cytosol	57.69	51.43
TraesCS2D01G524400.1	Wheat	cytosol	53.21	51.23
TraesCS7D01G194900.1	Wheat	cytosol	56.41	50.29
TraesCS3D01G509600.1	Wheat	cytosol	54.49	49.42
TraesCS7D01G545000.2	Wheat	cytosol	53.85	49.12
TraesCS6D01G044400.1	Wheat	cytosol	40.38	46.67
TraesCS7D01G544900.1	Wheat	cytosol	42.31	46.15
PGSC0003DMT400090072	Potato	cytosol	30.13	46.08
Os02t0101600-00	Rice	cytosol	46.79	45.34
TraesCS3D01G016600.1	Wheat	cytosol	46.15	43.64
TraesCS5D01G337000.1	Wheat	cytosol	44.87	42.17
TraesCS5D01G337100.1	Wheat	cytosol	44.87	42.17
PGSC0003DMT400088079	Potato	cytosol	30.77	41.74
TraesCS5D01G173200.1	Wheat	cytosol	46.15	40.0
CDY03015	Canola	cytosol	38.46	39.74
PGSC0003DMT400086770	Potato	cytosol	31.41	38.89
TraesCS5D01G379900.1	Wheat	cytosol	36.54	38.78
PGSC0003DMT400085217	Potato	cytosol	32.05	38.46
PGSC0003DMT400085417	Potato	cytosol	29.49	36.51
TraesCS5D01G176900.1	Wheat	cytosol	45.51	36.22
PGSC0003DMT400095953	Potato	cytosol	36.54	36.08
PGSC0003DMT400093573	Potato	cytosol	33.97	35.1
PGSC0003DMT400038385	Potato	cytosol	33.97	35.1
PGSC0003DMT400090609	Potato	cytosol	33.97	35.1
Solyc11g008230.1.1	Tomato	cytosol	35.26	34.81
PGSC0003DMT400091657	Potato	cytosol	35.26	34.81
PGSC0003DMT400088820	Potato	cytosol	33.33	34.44
PGSC0003DMT400087694	Potato	cytosol	32.69	34.0
GSMUA_Achr4P25740_001	Banana	cytosol	32.05	33.78
PGSC0003DMT400088220	Potato	cytosol	32.69	33.77
PGSC0003DMT400093419	Potato	cytosol	32.69	33.77
Solyc03g112710.1.1	Tomato	cytosol	32.69	33.77
VIT_19s0085g00180.t01	Wine grape	cytosol	32.69	33.55
PGSC0003DMT400088621	Potato	cytosol	25.0	33.33
PGSC0003DMT400097239	Potato	cytosol	32.05	33.11
Solyc11g008240.1.1	Tomato	cytosol	33.33	32.91
Solyc11g008400.1.1	Tomato	cytosol	37.82	32.78
PGSC0003DMT400019185	Potato	cytosol	37.82	32.78
TraesCS3D01G077800.1	Wheat	cytosol	35.26	32.74
VIT_15s0045g00490.t01	Wine grape	cytosol	31.41	32.45
PGSC0003DMT400096238	Potato	cytosol	30.77	32.21
TraesCS1D01G201900.1	Wheat	cytosol	33.97	31.93
TraesCS5D01G337200.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	50.0	31.58
VIT_10s0003g05820.t01	Wine grape	cytosol	32.69	31.48
VIT_19s0085g00190.t01	Wine grape	cytosol	30.77	30.57
GSMUA_Achr4P25750_001	Banana	cytosol	34.62	30.51
Solyc03g093190.1.1	Tomato	cytosol	23.08	29.51
PGSC0003DMT400089461	Potato	cytosol	22.44	27.56
PGSC0003DMT400093338	Potato	cytosol	28.85	26.79
KRH13748	Soybean	cytosol	28.85	24.59
PGSC0003DMT400019237	Potato	cytosol	28.21	23.28
Solyc11g008420.1.1	Tomato	cytosol	27.56	22.75
TraesCS1D01G138400.1	Wheat	cytosol	34.62	22.69
PGSC0003DMT400096074	Potato	cytosol	21.79	19.77
TraesCS3D01G305500.1	Wheat	cytosol	34.62	10.57

Protein Annotations

EnsemblPlants:TraesCS6D01G020500.1	EnsemblPlantsGene:TraesCS6D01G020500	Gene3D:3.30.710.10	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:SKP1	InterPro:SKP1-like	InterPro:SKP1-like_dim_sf
InterPro:SKP1/BTB/POZ_sf	InterPro:Skp1_comp_POZ	PANTHER:PTHR11165	PANTHER:PTHR11165:SF89	PFAM:PF03931	PIRSF:PIRSF028729
SEG:seg	SMART:SM00512	SUPFAM:SSF54695	SUPFAM:SSF81382	MapMan:19.2.2.8.1.1	:

Description

No Description!

Coordinates

chr6D:+:8140572..8141878

Molecular Weight (calculated)

17124.6 Da

IEP (calculated)

4.404

GRAVY (calculated)

-0.127

Length

156 amino acids

Sequence
(BLAST)

001: MATAEAGENK MIMLISSDGM EFEVEEAIAM ESQTIRQMIE DECAGKGIPI PNINSKILSR VIEYCNKHVP TMPTTGATGA ATSDTVAPAA LAEDLKIWDR
101: EFIKVNRATL LDLNQAASYL NIKGLLDLTC QTTDTISGHN LEELRSFLQH QERLLA

Best Arabidopsis Sequence Match ( AT1G75950.1 )
(BLAST)

001: MSAKKIVLKS SDGESFEVEE AVALESQTIA HMVEDDCVDN GVPLPNVTSK ILAKVIEYCK RHVEAAASKA EAVEGAATSD DDLKAWDADF MKIDQATLFE
101: LILAANYLNI KNLLDLTCQT VADMIKGKTP EEIRTTFNIK NDFTPEEEEE VRRENQWAFE

Arabidopsis Description

SKP1ASKP1-like protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q39255]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.