Factsheet for PGSC0003DMT400096238

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400093338	Potato	cytosol	85.91	76.19
PGSC0003DMT400086770	Potato	cytosol	58.39	69.05
PGSC0003DMT400085217	Potato	cytosol	59.06	67.69
PGSC0003DMT400088079	Potato	cytosol	51.68	66.96
PGSC0003DMT400090609	Potato	cytosol	67.79	66.89
PGSC0003DMT400093573	Potato	cytosol	67.79	66.89
PGSC0003DMT400038385	Potato	cytosol	67.11	66.23
PGSC0003DMT400088820	Potato	cytosol	67.11	66.23
PGSC0003DMT400088220	Potato	cytosol	65.77	64.9
PGSC0003DMT400085417	Potato	cytosol	54.36	64.29
PGSC0003DMT400097239	Potato	cytosol	65.1	64.24
PGSC0003DMT400088621	Potato	cytosol	50.34	64.1
PGSC0003DMT400087694	Potato	cytosol	64.43	64.0
PGSC0003DMT400093419	Potato	cytosol	63.76	62.91
PGSC0003DMT400096074	Potato	cytosol	65.77	56.98
PGSC0003DMT400068720	Potato	cytosol	48.99	48.99
PGSC0003DMT400024783	Potato	cytosol	48.99	48.67
PGSC0003DMT400068727	Potato	cytosol	48.99	48.67
TraesCS4A01G366400.1	Wheat	cytosol	52.35	47.56
PGSC0003DMT400015825	Potato	cytosol	49.66	47.44
TraesCS2D01G560500.1	Wheat	cytosol	51.68	46.95
TraesCS2D01G560400.1	Wheat	cytosol	51.01	46.34
TraesCS2D01G560700.1	Wheat	cytosol	51.01	46.34
TraesCS2D01G560300.1	Wheat	cytosol	50.34	45.73
TraesCS5B01G474100.1	Wheat	cytosol	49.66	45.68
TraesCS5A01G462800.1	Wheat	cytosol	40.94	45.52
TraesCS6A01G000300.1	Wheat	cytosol	49.66	45.4
TraesCS6B01G004300.1	Wheat	cytosol	49.66	45.4
TraesCS3B01G308600.1	Wheat	cytosol	48.99	44.79
OQU87046	Sorghum	cytosol	40.27	44.78
TraesCS3B01G566400.1	Wheat	cytosol	42.95	44.76
TraesCS5D01G475600.1	Wheat	cytosol	52.35	44.57
TraesCS6D01G045500.1	Wheat	cytosol	50.34	44.38
TraesCS7D01G016900.1	Wheat	cytosol	50.34	44.38
PGSC0003DMT400015827	Potato	cytosol	46.98	44.3
PGSC0003DMT400068726	Potato	cytosol	44.3	44.0
TraesCS2D01G420100.1	Wheat	cytosol	51.68	44.0
TraesCS2B01G590600.1	Wheat	cytosol	51.01	43.68
TraesCS4A01G472600.1	Wheat	cytosol	50.34	43.6
TraesCS7A01G020600.1	Wheat	cytosol	50.34	43.6
TraesCS5D01G475400.1	Wheat	golgi, plastid, unclear	51.01	43.43
Os11t0456300-01	Rice	plasma membrane	50.34	43.35
EES09697	Sorghum	cytosol	51.01	43.18
Zm00001d049230_P001	Maize	mitochondrion	51.01	43.18
TraesCS6B01G053400.1	Wheat	cytosol	39.6	43.07
TraesCS6D01G044400.1	Wheat	cytosol	38.93	42.96
TraesCS6D01G001600.1	Wheat	cytosol	50.34	42.86
TraesCS7D01G194900.1	Wheat	cytosol	50.34	42.86
HORVU5Hr1G110790.1	Barley	cytosol	29.53	42.72
EES06093	Sorghum	cytosol	48.32	42.6
TraesCS3D01G509600.1	Wheat	cytosol	48.99	42.44
TraesCS7B01G098900.1	Wheat	cytosol	49.66	42.29
HORVU5Hr1G110810.1	Barley	cytosol	43.62	42.21
HORVU5Hr1G110840.1	Barley	cytosol	49.66	42.05
HORVU5Hr1G110850.1	Barley	cytosol	49.66	41.57
HORVU5Hr1G110720.2	Barley	cytosol	48.99	41.01
Os09t0539500-01	Rice	cytosol, plasma membrane, plastid	47.65	40.57
EES13900	Sorghum	cytosol	45.64	40.48
EER99267	Sorghum	cytosol	46.98	40.46
TraesCS2B01G442100.1	Wheat	mitochondrion	48.32	40.45
HORVU5Hr1G090360.1	Barley	cytosol	47.65	39.89
HORVU5Hr1G110800.1	Barley	cytosol	47.65	39.89
HORVU5Hr1G110820.2	Barley	cytosol	47.65	39.89
CDY03015	Canola	cytosol	40.27	39.74
HORVU5Hr1G110830.3	Barley	cytosol	47.65	39.66
HORVU2Hr1G115410.2	Barley	cytosol	44.3	39.29
TraesCS7A01G193600.1	Wheat	cytosol	35.57	38.97
TraesCS2A01G522300.1	Wheat	cytosol	45.64	38.64
TraesCS4B01G337400.1	Wheat	cytosol	40.94	38.61
HORVU2Hr1G115400.1	Barley	cytosol	45.64	38.42
HORVU2Hr1G115420.1	Barley	cytosol	45.64	38.42
HORVU5Hr1G110760.2	Barley	cytosol	40.94	38.36
HORVU2Hr1G115380.1	Barley	cytosol	46.31	38.33
TraesCS7A01G498800.1	Wheat	cytosol	42.28	38.18
TraesCS2D01G524400.1	Wheat	cytosol	40.94	37.65
PGSC0003DMT400090072	Potato	cytosol	25.5	37.25
HORVU3Hr1G089860.3	Barley	cytosol	44.97	37.22
TraesCS5B01G165700.1	Wheat	cytosol	43.62	37.14
Os09t0273800-01	Rice	cytosol	41.61	37.13
HORVU7Hr1G099950.1	Barley	cytosol	42.95	36.99
HORVU7Hr1G099860.2	Barley	cytosol, mitochondrion, nucleus	42.95	36.57
GSMUA_Achr4P25740_001	Banana	cytosol	36.24	36.49
VIT_15s0045g00490.t01	Wine grape	cytosol	36.91	36.42
HORVU7Hr1G103140.2	Barley	cytosol	43.62	36.11
Os08t0375500-00	Rice	cytosol	40.94	36.09
TraesCS7D01G545000.2	Wheat	cytosol	40.94	35.67
TraesCS3A01G374400.1	Wheat	cytosol	38.93	35.58
TraesCS3B01G406500.1	Wheat	cytosol	38.93	35.58
TraesCS5D01G173200.1	Wheat	cytosol	42.95	35.56
Os08t0375700-00	Rice	cytosol	40.27	35.5
Os09t0274800-00	Rice	cytosol	40.94	35.47
HORVU7Hr1G099840.1	Barley	cytosol	41.61	35.43
PGSC0003DMT400094745	Potato	cytosol	24.83	35.24
TraesCS5A01G168900.1	Wheat	cytosol	42.95	35.16
TraesCS7D01G544900.1	Wheat	cytosol	33.56	34.97
VIT_19s0085g00180.t01	Wine grape	cytosol	35.57	34.87
TraesCS7B01G492400.1	Wheat	cytosol	40.94	34.66
TraesCS7B01G492500.1	Wheat	cytosol	40.94	34.66
VIT_10s0003g05820.t01	Wine grape	cytosol	37.58	34.57
Os09t0412050-00	Rice	cytosol	38.93	34.52
GSMUA_Achr4P25750_001	Banana	cytosol	40.94	34.46
VIT_19s0085g00190.t01	Wine grape	cytosol	36.24	34.39
TraesCS3B01G092200.1	Wheat	cytosol	38.26	34.34
HORVU7Hr1G002220.1	Barley	cytosol, plastid	48.32	34.29
TraesCS4A01G379700.1	Wheat	cytosol	34.23	34.23
PGSC0003DMT400095953	Potato	cytosol	36.24	34.18
TraesCS7A01G565800.1	Wheat	cytosol	40.27	34.09
TraesCS7B01G492200.1	Wheat	cytosol	40.27	34.09
TraesCS7B01G492300.1	Wheat	cytosol	40.27	34.09
TraesCS5A01G093500.1	Wheat	cytosol	37.58	33.94
TraesCS3D01G077800.1	Wheat	cytosol	38.26	33.93
TraesCS1D01G201900.1	Wheat	cytosol	37.58	33.73
TraesCS5B01G099600.1	Wheat	cytosol	39.6	33.71
TraesCS6D01G002600.1	Wheat	cytosol	39.6	33.71
TraesCS5D01G105800.1	Wheat	cytosol	32.89	33.56
PGSC0003DMT400091657	Potato	cytosol	35.57	33.54
Zm00001d022618_P001	Maize	cytosol	38.26	33.33
TraesCS5D01G176900.1	Wheat	cytosol	42.95	32.65
TraesCS6B01G008800.1	Wheat	cytosol	38.26	32.57
Zm00001d007590_P001	Maize	cytosol	40.94	32.45
TraesCS7A01G565700.1	Wheat	cytosol	36.91	32.16
TraesCS2A01G574500.1	Wheat	cytosol	36.24	32.14
TraesCS5B01G372700.1	Wheat	cytosol	34.9	32.1
TraesCS5B01G169700.1	Wheat	cytosol	42.95	32.0
TraesCS5D01G379900.1	Wheat	cytosol	31.54	31.97
Os06t0113800-00	Rice	cytosol	35.57	31.93
Zm00001d007659_P001	Maize	cytosol	40.94	31.77
HORVU5Hr1G092210.1	Barley	cytosol	34.23	31.68
Zm00001d007589_P001	Maize	cytosol	40.94	31.44
TraesCS6A01G017300.1	Wheat	cytosol	32.89	31.41
Zm00001d007586_P001	Maize	cytosol	40.27	31.25
TraesCS5A01G172300.1	Wheat	cytosol	40.94	30.96
TraesCS6D01G020500.1	Wheat	cytosol	32.21	30.77
PGSC0003DMT400019185	Potato	cytosol	36.91	30.56
Os07t0625600-00	Rice	cytosol	36.24	30.34
TraesCS6A01G016900.1	Wheat	cytosol	36.24	30.34
Os09t0275200-01	Rice	cytosol	31.54	29.38
Os07t0625500-01	Rice	cytosol	34.23	29.31
TraesCS6B01G024700.1	Wheat	cytosol	32.89	29.17
PGSC0003DMT400089461	Potato	cytosol	24.83	29.13
OQU76826	Sorghum	cytosol	33.56	28.9
HORVU7Hr1G099790.1	Barley	cytosol, plastid	37.58	28.43
Os07t0624900-00	Rice	cytosol	36.24	27.0
Os02t0101600-00	Rice	cytosol	28.19	26.09
KRH13748	Soybean	cytosol	31.54	25.68
PGSC0003DMT400019237	Potato	cytosol	31.54	24.87
Zm00001d042677_P001	Maize	plastid	42.28	23.86
TraesCS1A01G129800.1	Wheat	cytosol	34.9	22.03
TraesCS1B01G156000.1	Wheat	cytosol	34.9	22.03
TraesCS1D01G138400.1	Wheat	cytosol	34.9	21.85
Os10t0438100-00	Rice	cytosol	32.21	21.82
HORVU1Hr1G035930.1	Barley	cytosol	34.23	21.07
EER94185	Sorghum	cytosol	28.19	19.91
HORVU3Hr1G074970.1	Barley	cytosol, nucleus	28.86	17.06
OQU90298	Sorghum	cytosol	37.58	16.05
TraesCS3B01G340200.1	Wheat	cytosol	35.57	12.71
TraesCS3D01G305500.1	Wheat	cytosol	38.26	11.15
TraesCS3A01G297000.1	Wheat	cytosol	39.6	11.13
TraesCS3B01G340100.1	Wheat	nucleus	34.23	9.81

Protein Annotations

MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	ncoils:Coil	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	UniProt:M1DY05	PFAM:PF01466	PFAM:PF03931
EnsemblPlantsGene:PGSC0003DMG400045809	PGSC:PGSC0003DMG400045809	EnsemblPlants:PGSC0003DMT400096238	PIRSF:PIRSF028729	PANTHER:PTHR11165	PANTHER:PTHR11165:SF24
InterPro:SKP1	InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf	SMART:SM00512	SUPFAM:SSF54695
SUPFAM:SSF81382	InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	UniParc:UPI00029592CA	SEG:seg	:

Description

Skp1 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400045809]

Coordinates

chr12:+:42654184..42654633

Molecular Weight (calculated)

17204.7 Da

IEP (calculated)

4.358

GRAVY (calculated)

-0.378

Length

149 amino acids

Sequence
(BLAST)

001: MSSEKLITLK TSDGEEFKPD ESIVMRSQVI KNIVQDVDCA SNVIPLTNVD GKTMCKVVEY WKKHSEEGVS KEVLMDFDKN FVKVDQSVLF YLLLTADFLN
101: DKEMLDVMCQ EVSNRIKGKT PEEIRKEFGI ENDFILEEEE ENLKRMLGL

Best Arabidopsis Sequence Match ( AT4G34210.1 )
(BLAST)

001: MSSKMIVLMS SDGQSFEVEE AVAIQSQTIA HMVEDDCVAD GIPLANVESK ILVKVIEYCK KHHVDEANPI SEEDLNNWDE KFMDLEQSTI FELILAANYL
101: NIKSLLDLTC QTVADMIKGK TPEEIRSTFN IENDFTPEEE EAVRKENQWA FE

Arabidopsis Description

ASK11SKP1-like protein 11 [Source:UniProtKB/Swiss-Prot;Acc:O49484]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.