Factsheet for PGSC0003DMT400019185

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g008400.1.1	Tomato	cytosol	95.56	95.56
EES13900	Sorghum	cytosol	46.67	50.0
TraesCS2D01G560500.1	Wheat	cytosol	45.56	50.0
PGSC0003DMT400088079	Potato	cytosol	31.67	49.57
HORVU5Hr1G110790.1	Barley	cytosol	28.33	49.51
TraesCS2D01G560400.1	Wheat	cytosol	45.0	49.39
TraesCS2D01G560700.1	Wheat	cytosol	45.0	49.39
TraesCS4A01G366400.1	Wheat	cytosol	45.0	49.39
PGSC0003DMT400024783	Potato	cytosol	41.11	49.33
PGSC0003DMT400068727	Potato	cytosol	41.11	49.33
OQU87046	Sorghum	cytosol	36.67	49.25
TraesCS7D01G016900.1	Wheat	cytosol	46.11	49.11
TraesCS2D01G560300.1	Wheat	cytosol	44.44	48.78
EES06093	Sorghum	cytosol	45.56	48.52
TraesCS6A01G000300.1	Wheat	cytosol	43.89	48.47
TraesCS6B01G004300.1	Wheat	cytosol	43.89	48.47
PGSC0003DMT400038385	Potato	cytosol	40.56	48.34
TraesCS4A01G472600.1	Wheat	cytosol	46.11	48.26
TraesCS7A01G020600.1	Wheat	cytosol	46.11	48.26
PGSC0003DMT400090072	Potato	cytosol	27.22	48.04
Os11t0456300-01	Rice	plasma membrane	46.11	47.98
TraesCS6D01G045500.1	Wheat	cytosol	45.0	47.93
PGSC0003DMT400095953	Potato	cytosol	41.67	47.47
PGSC0003DMT400015825	Potato	cytosol	41.11	47.44
TraesCS5D01G475600.1	Wheat	cytosol	46.11	47.43
TraesCS6D01G001600.1	Wheat	cytosol	46.11	47.43
HORVU5Hr1G110810.1	Barley	cytosol	40.56	47.4
TraesCS3B01G308600.1	Wheat	cytosol	42.78	47.24
EES09697	Sorghum	cytosol	46.11	47.16
Zm00001d049230_P001	Maize	mitochondrion	46.11	47.16
TraesCS2B01G590600.1	Wheat	cytosol	45.56	47.13
PGSC0003DMT400088820	Potato	cytosol	39.44	47.02
PGSC0003DMT400090609	Potato	cytosol	39.44	47.02
PGSC0003DMT400093573	Potato	cytosol	39.44	47.02
TraesCS2D01G420100.1	Wheat	cytosol	45.56	46.86
TraesCS7B01G098900.1	Wheat	cytosol	45.56	46.86
PGSC0003DMT400087694	Potato	cytosol	38.89	46.67
TraesCS3D01G509600.1	Wheat	cytosol	44.44	46.51
TraesCS5B01G474100.1	Wheat	cytosol	41.67	46.3
TraesCS5D01G475400.1	Wheat	golgi, plastid, unclear	45.0	46.29
TraesCS7D01G194900.1	Wheat	cytosol	45.0	46.29
PGSC0003DMT400015827	Potato	cytosol	40.56	46.2
TraesCS3B01G566400.1	Wheat	cytosol	36.67	46.15
PGSC0003DMT400093419	Potato	cytosol	38.33	45.7
PGSC0003DMT400068720	Potato	cytosol	37.78	45.64
PGSC0003DMT400091657	Potato	cytosol	40.0	45.57
PGSC0003DMT400085217	Potato	cytosol	32.78	45.38
PGSC0003DMT400068726	Potato	cytosol	37.78	45.33
TraesCS6B01G053400.1	Wheat	cytosol	34.44	45.26
PGSC0003DMT400097239	Potato	cytosol	37.78	45.03
HORVU5Hr1G110800.1	Barley	cytosol	44.44	44.94
HORVU5Hr1G110820.2	Barley	cytosol	44.44	44.94
HORVU5Hr1G110840.1	Barley	cytosol	43.89	44.89
PGSC0003DMT400089461	Potato	cytosol	31.67	44.88
TraesCS5B01G099600.1	Wheat	cytosol	43.33	44.57
TraesCS5B01G165700.1	Wheat	cytosol	43.33	44.57
PGSC0003DMT400088621	Potato	cytosol	28.89	44.44
TraesCS5D01G173200.1	Wheat	cytosol	44.44	44.44
HORVU5Hr1G110830.3	Barley	cytosol	43.89	44.13
VIT_19s0085g00180.t01	Wine grape	cytosol	37.22	44.08
TraesCS5A01G462800.1	Wheat	cytosol	32.78	44.03
TraesCS5A01G168900.1	Wheat	cytosol	44.44	43.96
HORVU5Hr1G090360.1	Barley	cytosol	43.33	43.82
HORVU5Hr1G110720.2	Barley	cytosol	43.33	43.82
HORVU5Hr1G110850.1	Barley	cytosol	43.33	43.82
PGSC0003DMT400088220	Potato	cytosol	36.67	43.71
TraesCS6D01G044400.1	Wheat	cytosol	32.78	43.7
TraesCS7A01G498800.1	Wheat	cytosol	40.0	43.64
PGSC0003DMT400086770	Potato	cytosol	30.0	42.86
EER99267	Sorghum	cytosol	41.11	42.77
HORVU7Hr1G099950.1	Barley	cytosol	41.11	42.77
HORVU5Hr1G110760.2	Barley	cytosol	37.78	42.77
Os09t0539500-01	Rice	cytosol, plasma membrane, plastid	41.11	42.29
Os08t0375500-00	Rice	cytosol	39.44	42.01
Os09t0274800-00	Rice	cytosol	40.0	41.86
TraesCS5A01G093500.1	Wheat	cytosol	38.33	41.82
CDY03015	Canola	cytosol	35.0	41.72
HORVU7Hr1G099860.2	Barley	cytosol, mitochondrion, nucleus	40.56	41.71
TraesCS6B01G024700.1	Wheat	cytosol	38.89	41.67
TraesCS2B01G442100.1	Wheat	mitochondrion	41.11	41.57
TraesCS2A01G522300.1	Wheat	cytosol	40.56	41.48
Os08t0375700-00	Rice	cytosol	38.89	41.42
TraesCS7A01G193600.1	Wheat	cytosol	31.11	41.18
HORVU7Hr1G099840.1	Barley	cytosol	40.0	41.14
Zm00001d007590_P001	Maize	cytosol	42.78	40.96
TraesCS3A01G374400.1	Wheat	cytosol	36.67	40.49
TraesCS5D01G105800.1	Wheat	cytosol	32.78	40.41
TraesCS5D01G176900.1	Wheat	cytosol	43.89	40.31
TraesCS5B01G169700.1	Wheat	cytosol	44.44	40.0
TraesCS6D01G002600.1	Wheat	cytosol	38.89	40.0
HORVU2Hr1G115410.2	Barley	cytosol	37.22	39.88
Os06t0113800-00	Rice	cytosol	36.67	39.76
Zm00001d007586_P001	Maize	cytosol	42.22	39.58
Os09t0273800-01	Rice	cytosol	36.67	39.52
VIT_10s0003g05820.t01	Wine grape	cytosol	35.56	39.51
Os09t0412050-00	Rice	cytosol	36.67	39.29
TraesCS4B01G337400.1	Wheat	cytosol	34.44	39.24
Zm00001d007589_P001	Maize	cytosol	42.22	39.18
PGSC0003DMT400019237	Potato	cytosol	41.11	39.15
TraesCS5A01G172300.1	Wheat	cytosol	42.78	39.09
Zm00001d007659_P001	Maize	cytosol	41.67	39.06
PGSC0003DMT400094745	Potato	cytosol	22.78	39.05
TraesCS4A01G379700.1	Wheat	cytosol	32.22	38.93
TraesCS7B01G492300.1	Wheat	cytosol	37.78	38.64
TraesCS3B01G092200.1	Wheat	cytosol	35.56	38.55
VIT_15s0045g00490.t01	Wine grape	cytosol	32.22	38.41
VIT_19s0085g00190.t01	Wine grape	cytosol	33.33	38.22
TraesCS6A01G016900.1	Wheat	cytosol	37.78	38.2
PGSC0003DMT400085417	Potato	cytosol	26.67	38.1
TraesCS5D01G379900.1	Wheat	cytosol	31.11	38.1
TraesCS7B01G492200.1	Wheat	cytosol	37.22	38.07
TraesCS3B01G406500.1	Wheat	cytosol	34.44	38.04
HORVU2Hr1G115400.1	Barley	cytosol	37.22	37.85
HORVU2Hr1G115420.1	Barley	cytosol	37.22	37.85
GSMUA_Achr4P25740_001	Banana	cytosol	31.11	37.84
TraesCS6D01G020500.1	Wheat	cytosol	32.78	37.82
HORVU2Hr1G115380.1	Barley	cytosol	37.78	37.78
HORVU3Hr1G089860.3	Barley	cytosol	37.78	37.78
TraesCS7D01G544900.1	Wheat	cytosol	30.0	37.76
HORVU7Hr1G002220.1	Barley	cytosol, plastid	43.89	37.62
Os09t0275200-01	Rice	cytosol	33.33	37.5
TraesCS3D01G077800.1	Wheat	cytosol	35.0	37.5
TraesCS7A01G565800.1	Wheat	cytosol	36.67	37.5
TraesCS7B01G492500.1	Wheat	cytosol	36.67	37.5
HORVU7Hr1G103140.2	Barley	cytosol	37.22	37.22
TraesCS6B01G008800.1	Wheat	cytosol	36.11	37.14
Os07t0625600-00	Rice	cytosol	36.67	37.08
PGSC0003DMT400096238	Potato	cytosol	30.56	36.91
TraesCS7A01G565700.1	Wheat	cytosol	35.0	36.84
TraesCS7D01G545000.2	Wheat	cytosol	35.0	36.84
HORVU5Hr1G092210.1	Barley	cytosol	32.78	36.65
TraesCS6A01G017300.1	Wheat	cytosol	31.67	36.54
TraesCS2D01G524400.1	Wheat	cytosol	32.78	36.42
TraesCS7B01G492400.1	Wheat	cytosol	35.56	36.36
Os07t0625500-01	Rice	cytosol	35.0	36.21
PGSC0003DMT400093338	Potato	cytosol	33.33	35.71
GSMUA_Achr4P25750_001	Banana	cytosol	35.0	35.59
OQU76826	Sorghum	cytosol	33.89	35.26
TraesCS5B01G372700.1	Wheat	cytosol	31.67	35.19
TraesCS2A01G574500.1	Wheat	cytosol	32.78	35.12
Zm00001d022618_P001	Maize	cytosol	33.33	35.09
TraesCS1D01G201900.1	Wheat	cytosol	32.22	34.94
Os07t0624900-00	Rice	cytosol	37.78	34.0
KRH13748	Soybean	cytosol	33.89	33.33
HORVU7Hr1G099790.1	Barley	cytosol, plastid	36.11	32.99
Os02t0101600-00	Rice	cytosol	27.78	31.06
Zm00001d042677_P001	Maize	plastid	43.89	29.92
Os10t0438100-00	Rice	cytosol	35.0	28.64
PGSC0003DMT400096074	Potato	cytosol	26.67	27.91
TraesCS1A01G129800.1	Wheat	cytosol	35.56	27.12
TraesCS1B01G156000.1	Wheat	cytosol	35.56	27.12
TraesCS1D01G138400.1	Wheat	cytosol	35.56	26.89
HORVU1Hr1G035930.1	Barley	cytosol	35.0	26.03
EER94185	Sorghum	cytosol	29.44	25.12
HORVU3Hr1G074970.1	Barley	cytosol, nucleus	27.78	19.84
OQU90298	Sorghum	cytosol	36.11	18.62
TraesCS3B01G340200.1	Wheat	cytosol	33.33	14.39
TraesCS3D01G305500.1	Wheat	cytosol	36.11	12.72
TraesCS3A01G297000.1	Wheat	cytosol	37.22	12.64
TraesCS3B01G340100.1	Wheat	nucleus	35.56	12.31

Protein Annotations

MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019538	UniProt:M1ABQ1	PFAM:PF01466	PFAM:PF03931	EnsemblPlantsGene:PGSC0003DMG400007422
PGSC:PGSC0003DMG400007422	EnsemblPlants:PGSC0003DMT400019185	PIRSF:PIRSF028729	PANTHER:PTHR11165	PANTHER:PTHR11165:SF89	InterPro:SKP1
InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf	SMART:SM00512	SUPFAM:SSF54695	SUPFAM:SSF81382
InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	UniParc:UPI000296D88E	SEG:seg	:	:

Description

SLF-interacting SKP1 [Source:PGSC_GENE;Acc:PGSC0003DMG400007422]

Coordinates

chr11:-:3634926..3636117

Molecular Weight (calculated)

20573.9 Da

IEP (calculated)

3.873

GRAVY (calculated)

-0.671

Length

180 amino acids

Sequence
(BLAST)

001: MAESEDTKKM VTLKSNDDKE FEVEEAAIIQ SEMIKNMIED GCATGVIPLP NIDSKTLTKV IEYLNKHISK DEDEDEDEAD DKGKAVETGE EDDLKEFDEQ
101: FVSMDWEELF DIIMAANYLN IHELMELCCQ SAADRLKNKS VRAVREMLKI TNDLTEEEEK EIINDAPWAF EGPEIDDTVN

Best Arabidopsis Sequence Match ( AT1G20140.1 )
(BLAST)

001: MAETKKMIIL KSSDGESFEI EEAVAVKSQT IKHMIEDDCA DNGIPLPNVT GAILAKVIEY CKKHVEAAAE AGGDKDFYGS AENDELKNWD SEFVKVDQPT
101: LFDLILAANY LNIGGLLDLT CKAVADQMRG KTPEQMRAHF NIKNDYTPEE EAEVRNENKW AFE

Arabidopsis Description

ASK4SK4 [Source:UniProtKB/TrEMBL;Acc:A0A178W187]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.