Factsheet for PGSC0003DMT400093338

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400096238	Potato	cytosol	76.19	85.91
PGSC0003DMT400090609	Potato	cytosol	62.5	69.54
PGSC0003DMT400038385	Potato	cytosol	61.9	68.87
PGSC0003DMT400088820	Potato	cytosol	61.9	68.87
PGSC0003DMT400093573	Potato	cytosol	61.31	68.21
PGSC0003DMT400086770	Potato	cytosol	50.6	67.46
PGSC0003DMT400088220	Potato	cytosol	60.12	66.89
PGSC0003DMT400096074	Potato	cytosol	68.45	66.86
PGSC0003DMT400088621	Potato	cytosol	46.43	66.67
PGSC0003DMT400093419	Potato	cytosol	58.33	64.9
PGSC0003DMT400097239	Potato	cytosol	58.33	64.9
PGSC0003DMT400087694	Potato	cytosol	57.74	64.67
PGSC0003DMT400085217	Potato	cytosol	50.0	64.62
PGSC0003DMT400088079	Potato	cytosol	44.05	64.35
PGSC0003DMT400085417	Potato	cytosol	46.43	61.9
PGSC0003DMT400024783	Potato	cytosol	47.02	52.67
PGSC0003DMT400068727	Potato	cytosol	46.43	52.0
PGSC0003DMT400068720	Potato	cytosol	45.83	51.68
PGSC0003DMT400015825	Potato	cytosol	47.02	50.64
TraesCS4A01G366400.1	Wheat	cytosol	48.21	49.39
TraesCS2D01G560500.1	Wheat	cytosol	47.62	48.78
TraesCS2D01G560400.1	Wheat	cytosol	47.02	48.17
TraesCS2D01G560700.1	Wheat	cytosol	47.02	48.17
PGSC0003DMT400015827	Potato	cytosol	45.24	48.1
TraesCS2D01G560300.1	Wheat	cytosol	46.43	47.56
TraesCS3B01G566400.1	Wheat	cytosol	40.48	47.55
TraesCS5B01G474100.1	Wheat	cytosol	45.83	47.53
PGSC0003DMT400068726	Potato	cytosol	42.26	47.33
TraesCS6A01G000300.1	Wheat	cytosol	45.83	47.24
TraesCS6B01G004300.1	Wheat	cytosol	45.83	47.24
OQU87046	Sorghum	cytosol	37.5	47.01
TraesCS5A01G462800.1	Wheat	cytosol	37.5	47.01
TraesCS3B01G308600.1	Wheat	cytosol	45.24	46.63
TraesCS5D01G475600.1	Wheat	cytosol	48.21	46.29
TraesCS6D01G045500.1	Wheat	cytosol	46.43	46.15
TraesCS7D01G016900.1	Wheat	cytosol	46.43	46.15
TraesCS6B01G053400.1	Wheat	cytosol	37.5	45.99
TraesCS6D01G044400.1	Wheat	cytosol	36.9	45.93
TraesCS2D01G420100.1	Wheat	cytosol	47.62	45.71
TraesCS2B01G590600.1	Wheat	cytosol	47.02	45.4
TraesCS4A01G472600.1	Wheat	cytosol	46.43	45.35
TraesCS7A01G020600.1	Wheat	cytosol	46.43	45.35
TraesCS5D01G475400.1	Wheat	golgi, plastid, unclear	47.02	45.14
TraesCS7D01G194900.1	Wheat	cytosol	47.02	45.14
Os11t0456300-01	Rice	plasma membrane	46.43	45.09
EES09697	Sorghum	cytosol	47.02	44.89
Zm00001d049230_P001	Maize	mitochondrion	47.02	44.89
HORVU5Hr1G110810.1	Barley	cytosol	41.07	44.81
TraesCS6D01G001600.1	Wheat	cytosol	46.43	44.57
TraesCS7B01G098900.1	Wheat	cytosol	46.43	44.57
TraesCS3D01G509600.1	Wheat	cytosol	45.24	44.19
EES06093	Sorghum	cytosol	44.05	43.79
HORVU5Hr1G110840.1	Barley	cytosol	45.83	43.75
Os09t0539500-01	Rice	cytosol, plasma membrane, plastid	45.24	43.43
TraesCS7A01G193600.1	Wheat	cytosol	35.12	43.38
HORVU5Hr1G110850.1	Barley	cytosol	45.83	43.26
HORVU5Hr1G090360.1	Barley	cytosol	45.24	42.7
HORVU5Hr1G110720.2	Barley	cytosol	45.24	42.7
CDY03015	Canola	cytosol	38.1	42.38
EER99267	Sorghum	cytosol	43.45	42.2
HORVU5Hr1G110800.1	Barley	cytosol	44.64	42.13
HORVU5Hr1G110820.2	Barley	cytosol	44.64	42.13
TraesCS2B01G442100.1	Wheat	mitochondrion	44.64	42.13
HORVU5Hr1G110830.3	Barley	cytosol	44.64	41.9
TraesCS4B01G337400.1	Wheat	cytosol	39.29	41.77
EES13900	Sorghum	cytosol	41.67	41.67
HORVU5Hr1G110760.2	Barley	cytosol	39.29	41.51
HORVU2Hr1G115410.2	Barley	cytosol	39.88	39.88
GSMUA_Achr4P25740_001	Banana	cytosol	35.12	39.86
TraesCS2A01G522300.1	Wheat	cytosol	41.67	39.77
Os08t0375500-00	Rice	cytosol	39.88	39.65
TraesCS7A01G498800.1	Wheat	cytosol	38.69	39.39
Os08t0375700-00	Rice	cytosol	39.29	39.05
HORVU2Hr1G115400.1	Barley	cytosol	41.07	38.98
HORVU2Hr1G115420.1	Barley	cytosol	41.07	38.98
Os09t0273800-01	Rice	cytosol	38.69	38.92
HORVU2Hr1G115380.1	Barley	cytosol	41.67	38.89
HORVU5Hr1G110790.1	Barley	cytosol	23.81	38.84
HORVU7Hr1G099950.1	Barley	cytosol	39.88	38.73
HORVU7Hr1G099860.2	Barley	cytosol, mitochondrion, nucleus	39.88	38.29
TraesCS5B01G165700.1	Wheat	cytosol	39.88	38.29
TraesCS3B01G092200.1	Wheat	cytosol	37.5	37.95
Os09t0274800-00	Rice	cytosol	38.69	37.79
HORVU3Hr1G089860.3	Barley	cytosol	40.48	37.78
Os09t0412050-00	Rice	cytosol	37.5	37.5
TraesCS1D01G201900.1	Wheat	cytosol	36.9	37.35
PGSC0003DMT400095953	Potato	cytosol	35.12	37.34
GSMUA_Achr4P25750_001	Banana	cytosol	39.29	37.29
TraesCS2D01G524400.1	Wheat	cytosol	35.71	37.04
VIT_10s0003g05820.t01	Wine grape	cytosol	35.71	37.04
HORVU7Hr1G103140.2	Barley	cytosol	39.29	36.67
TraesCS5D01G173200.1	Wheat	cytosol	39.29	36.67
HORVU7Hr1G099840.1	Barley	cytosol	38.1	36.57
TraesCS6D01G002600.1	Wheat	cytosol	38.1	36.57
TraesCS3D01G077800.1	Wheat	cytosol	36.31	36.31
TraesCS5A01G168900.1	Wheat	cytosol	39.29	36.26
VIT_19s0085g00180.t01	Wine grape	cytosol	32.74	36.18
HORVU7Hr1G002220.1	Barley	cytosol, plastid	44.64	35.71
TraesCS5D01G105800.1	Wheat	cytosol	30.95	35.62
PGSC0003DMT400091657	Potato	cytosol	33.33	35.44
TraesCS5B01G099600.1	Wheat	cytosol	36.9	35.43
PGSC0003DMT400090072	Potato	cytosol	21.43	35.29
TraesCS7B01G492300.1	Wheat	cytosol	36.9	35.23
TraesCS7B01G492500.1	Wheat	cytosol	36.9	35.23
TraesCS5D01G176900.1	Wheat	cytosol	41.07	35.2
TraesCS5B01G372700.1	Wheat	cytosol	33.93	35.19
TraesCS5A01G093500.1	Wheat	cytosol	34.52	35.15
TraesCS7D01G545000.2	Wheat	cytosol	35.71	35.09
TraesCS7D01G544900.1	Wheat	cytosol	29.76	34.97
TraesCS7A01G565800.1	Wheat	cytosol	36.31	34.66
TraesCS7B01G492200.1	Wheat	cytosol	36.31	34.66
TraesCS5A01G172300.1	Wheat	cytosol	40.48	34.52
Zm00001d022618_P001	Maize	cytosol	35.12	34.5
TraesCS5B01G169700.1	Wheat	cytosol	41.07	34.5
HORVU5Hr1G092210.1	Barley	cytosol	32.74	34.16
TraesCS5D01G379900.1	Wheat	cytosol	29.76	34.01
TraesCS2A01G574500.1	Wheat	cytosol	33.93	33.93
PGSC0003DMT400089461	Potato	cytosol	25.6	33.86
VIT_15s0045g00490.t01	Wine grape	cytosol	30.36	33.77
TraesCS3B01G406500.1	Wheat	cytosol	32.74	33.74
TraesCS6B01G008800.1	Wheat	cytosol	35.12	33.71
PGSC0003DMT400019185	Potato	cytosol	35.71	33.33
PGSC0003DMT400094745	Potato	cytosol	20.83	33.33
Os07t0625600-00	Rice	cytosol	35.12	33.15
Os06t0113800-00	Rice	cytosol	32.74	33.13
TraesCS3A01G374400.1	Wheat	cytosol	32.14	33.13
Os09t0275200-01	Rice	cytosol	31.55	33.12
Zm00001d007590_P001	Maize	cytosol	36.9	32.98
TraesCS7B01G492400.1	Wheat	cytosol	34.52	32.95
TraesCS7A01G565700.1	Wheat	cytosol	33.33	32.75
TraesCS6B01G024700.1	Wheat	cytosol	32.74	32.74
TraesCS6A01G016900.1	Wheat	cytosol	34.52	32.58
VIT_19s0085g00190.t01	Wine grape	cytosol	30.36	32.48
Zm00001d007659_P001	Maize	cytosol	36.9	32.29
TraesCS4A01G379700.1	Wheat	cytosol	28.57	32.21
Zm00001d007589_P001	Maize	cytosol	36.9	31.96
Zm00001d007586_P001	Maize	cytosol	36.31	31.77
OQU76826	Sorghum	cytosol	32.14	31.21
KRH13748	Soybean	cytosol	33.33	30.6
Os07t0625500-01	Rice	cytosol	31.55	30.46
TraesCS6A01G017300.1	Wheat	cytosol	27.38	29.49
TraesCS6D01G020500.1	Wheat	cytosol	26.79	28.85
PGSC0003DMT400019237	Potato	cytosol	32.14	28.57
Os07t0624900-00	Rice	cytosol	33.93	28.5
HORVU7Hr1G099790.1	Barley	cytosol, plastid	31.55	26.9
Zm00001d042677_P001	Maize	plastid	38.69	24.62
TraesCS1A01G129800.1	Wheat	cytosol	33.93	24.15
TraesCS1B01G156000.1	Wheat	cytosol	33.93	24.15
Os10t0438100-00	Rice	cytosol	31.55	24.09
TraesCS1D01G138400.1	Wheat	cytosol	33.93	23.95
Os02t0101600-00	Rice	cytosol	22.62	23.6
HORVU1Hr1G035930.1	Barley	cytosol	33.33	23.14
EER94185	Sorghum	cytosol	27.98	22.27
HORVU3Hr1G074970.1	Barley	cytosol, nucleus	25.6	17.06
OQU90298	Sorghum	cytosol	34.52	16.62
TraesCS3B01G340200.1	Wheat	cytosol	33.93	13.67
TraesCS3A01G297000.1	Wheat	cytosol	37.5	11.89
TraesCS3D01G305500.1	Wheat	cytosol	35.71	11.74
TraesCS3B01G340100.1	Wheat	nucleus	33.33	10.77

Protein Annotations

MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	GO:GO:0005575	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0019538	UniProt:M1DRR5
PFAM:PF01466	PFAM:PF03931	EnsemblPlantsGene:PGSC0003DMG400042909	PGSC:PGSC0003DMG400042909	EnsemblPlants:PGSC0003DMT400093338	PIRSF:PIRSF028729
PANTHER:PTHR11165	PANTHER:PTHR11165:SF89	InterPro:SKP1	InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf
SMART:SM00512	SUPFAM:SSF54695	SUPFAM:SSF81382	InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	TMHMM:TMhelix
UniParc:UPI000294F0FC	:	:	:	:	:

Description

Skp1 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400042909]

Coordinates

chr12:-:38205360..38205866

Molecular Weight (calculated)

19711.9 Da

IEP (calculated)

4.635

GRAVY (calculated)

-0.166

Length

168 amino acids

Sequence
(BLAST)

001: MSSEKLITLK TNDGEEFKLN ESIVMRSQVI KNIVQDVDCA FRVIPLTNVD GKTMCKVVEY WKTHSEEGVS KEVLMDFDKN FVKMDQSVLF YLLLASDFLN
101: DKEMLDVMCQ EVADRIKCKT LEEIRKEFGI KNDFTPEEEE ENRKQNAWAL NAFIRLVLFS IFVLFFRI

Best Arabidopsis Sequence Match ( AT4G34210.1 )
(BLAST)

001: MSSKMIVLMS SDGQSFEVEE AVAIQSQTIA HMVEDDCVAD GIPLANVESK ILVKVIEYCK KHHVDEANPI SEEDLNNWDE KFMDLEQSTI FELILAANYL
101: NIKSLLDLTC QTVADMIKGK TPEEIRSTFN IENDFTPEEE EAVRKENQWA FE

Arabidopsis Description

ASK11SKP1-like protein 11 [Source:UniProtKB/Swiss-Prot;Acc:O49484]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.