Factsheet for PGSC0003DMT400091657

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400095953	Potato	cytosol	88.61	88.61
Solyc11g008230.1.1	Tomato	cytosol	84.18	84.18
PGSC0003DMT400089461	Potato	cytosol	67.09	83.46
PGSC0003DMT400090072	Potato	cytosol	53.8	83.33
PGSC0003DMT400024783	Potato	cytosol	45.57	48.0
PGSC0003DMT400068727	Potato	cytosol	44.94	47.33
PGSC0003DMT400015825	Potato	cytosol	46.2	46.79
PGSC0003DMT400019237	Potato	cytosol	55.7	46.56
PGSC0003DMT400068720	Potato	cytosol	43.04	45.64
TraesCS2D01G560400.1	Wheat	cytosol	46.84	45.12
EER99267	Sorghum	cytosol	49.37	45.09
HORVU5Hr1G110810.1	Barley	cytosol	43.67	44.81
PGSC0003DMT400068726	Potato	cytosol	42.41	44.67
HORVU5Hr1G110790.1	Barley	cytosol	29.11	44.66
TraesCS2D01G560300.1	Wheat	cytosol	46.2	44.51
TraesCS2D01G560500.1	Wheat	cytosol	46.2	44.51
PGSC0003DMT400015827	Potato	cytosol	44.3	44.3
TraesCS6A01G000300.1	Wheat	cytosol	45.57	44.17
TraesCS6B01G004300.1	Wheat	cytosol	45.57	44.17
TraesCS7B01G098900.1	Wheat	cytosol	48.73	44.0
TraesCS2D01G560700.1	Wheat	cytosol	45.57	43.9
TraesCS4A01G366400.1	Wheat	cytosol	45.57	43.9
TraesCS7D01G194900.1	Wheat	cytosol	48.1	43.43
Os11t0456300-01	Rice	plasma membrane	47.47	43.35
HORVU5Hr1G110800.1	Barley	cytosol	48.73	43.26
HORVU5Hr1G110820.2	Barley	cytosol	48.73	43.26
TraesCS7D01G016900.1	Wheat	cytosol	46.2	43.2
CDY03015	Canola	cytosol	41.14	43.05
HORVU5Hr1G110830.3	Barley	cytosol	48.73	43.02
TraesCS3B01G308600.1	Wheat	cytosol	44.3	42.94
TraesCS2D01G420100.1	Wheat	cytosol	47.47	42.86
TraesCS6D01G001600.1	Wheat	cytosol	47.47	42.86
PGSC0003DMT400087694	Potato	cytosol	40.51	42.67
TraesCS6D01G045500.1	Wheat	cytosol	45.57	42.6
TraesCS5B01G474100.1	Wheat	cytosol	43.67	42.59
OQU87046	Sorghum	cytosol	36.08	42.54
TraesCS3D01G509600.1	Wheat	cytosol	46.2	42.44
TraesCS4A01G472600.1	Wheat	cytosol	46.2	42.44
TraesCS7A01G020600.1	Wheat	cytosol	46.2	42.44
PGSC0003DMT400088820	Potato	cytosol	40.51	42.38
TraesCS5D01G475400.1	Wheat	golgi, plastid, unclear	46.84	42.29
TraesCS5D01G475600.1	Wheat	cytosol	46.84	42.29
EES13900	Sorghum	cytosol	44.94	42.26
EES09697	Sorghum	cytosol	46.84	42.05
HORVU5Hr1G110840.1	Barley	cytosol	46.84	42.05
Zm00001d049230_P001	Maize	mitochondrion	46.84	42.05
EES06093	Sorghum	cytosol	44.94	42.01
TraesCS2B01G590600.1	Wheat	cytosol	46.2	41.95
PGSC0003DMT400038385	Potato	cytosol	39.87	41.72
TraesCS6D01G044400.1	Wheat	cytosol	35.44	41.48
TraesCS3B01G566400.1	Wheat	cytosol	37.34	41.26
PGSC0003DMT400090609	Potato	cytosol	39.24	41.06
PGSC0003DMT400093573	Potato	cytosol	39.24	41.06
HORVU5Hr1G110850.1	Barley	cytosol	46.2	41.01
TraesCS2B01G442100.1	Wheat	mitochondrion	46.2	41.01
TraesCS2A01G522300.1	Wheat	cytosol	45.57	40.91
HORVU5Hr1G110760.2	Barley	cytosol	41.14	40.88
Os08t0375500-00	Rice	cytosol	43.67	40.83
Os08t0375700-00	Rice	cytosol	43.67	40.83
HORVU5Hr1G110720.2	Barley	cytosol	45.57	40.45
TraesCS5A01G462800.1	Wheat	cytosol	34.18	40.3
VIT_19s0085g00180.t01	Wine grape	cytosol	38.61	40.13
TraesCS2D01G524400.1	Wheat	cytosol	41.14	40.12
PGSC0003DMT400019185	Potato	cytosol	45.57	40.0
HORVU5Hr1G090360.1	Barley	cytosol	44.94	39.89
Os09t0273800-01	Rice	cytosol	41.77	39.52
HORVU7Hr1G099840.1	Barley	cytosol	43.67	39.43
Os09t0539500-01	Rice	cytosol, plasma membrane, plastid	43.67	39.43
TraesCS6B01G053400.1	Wheat	cytosol	34.18	39.42
HORVU2Hr1G115410.2	Barley	cytosol	41.77	39.29
PGSC0003DMT400085217	Potato	cytosol	32.28	39.23
PGSC0003DMT400088220	Potato	cytosol	37.34	39.07
PGSC0003DMT400097239	Potato	cytosol	37.34	39.07
TraesCS6D01G002600.1	Wheat	cytosol	43.04	38.86
TraesCS6B01G024700.1	Wheat	cytosol	41.14	38.69
TraesCS5B01G099600.1	Wheat	cytosol	42.41	38.29
PGSC0003DMT400088079	Potato	cytosol	27.85	38.26
HORVU7Hr1G099950.1	Barley	cytosol	41.77	38.15
PGSC0003DMT400094745	Potato	cytosol	25.32	38.1
HORVU2Hr1G115420.1	Barley	cytosol	42.41	37.85
Os09t0274800-00	Rice	cytosol	41.14	37.79
HORVU2Hr1G115380.1	Barley	cytosol	43.04	37.78
PGSC0003DMT400093419	Potato	cytosol	36.08	37.75
VIT_10s0003g05820.t01	Wine grape	cytosol	38.61	37.65
TraesCS5A01G093500.1	Wheat	cytosol	39.24	37.58
TraesCS7A01G193600.1	Wheat	cytosol	32.28	37.5
Os06t0113800-00	Rice	cytosol	39.24	37.35
HORVU2Hr1G115400.1	Barley	cytosol	41.77	37.29
KRH13748	Soybean	cytosol	43.04	37.16
HORVU7Hr1G099860.2	Barley	cytosol, mitochondrion, nucleus	41.14	37.14
TraesCS5D01G105800.1	Wheat	cytosol	34.18	36.99
TraesCS7A01G498800.1	Wheat	cytosol	38.61	36.97
TraesCS7B01G492200.1	Wheat	cytosol	41.14	36.93
PGSC0003DMT400088621	Potato	cytosol	27.22	36.75
Zm00001d007590_P001	Maize	cytosol	43.67	36.7
HORVU3Hr1G089860.3	Barley	cytosol	41.77	36.67
TraesCS5B01G165700.1	Wheat	cytosol	40.51	36.57
TraesCS7B01G492300.1	Wheat	cytosol	40.51	36.36
TraesCS7A01G565700.1	Wheat	cytosol	39.24	36.26
TraesCS1D01G201900.1	Wheat	cytosol	37.97	36.14
TraesCS3B01G092200.1	Wheat	cytosol	37.97	36.14
HORVU7Hr1G103140.2	Barley	cytosol	41.14	36.11
Zm00001d007589_P001	Maize	cytosol	44.3	36.08
TraesCS6B01G008800.1	Wheat	cytosol	39.87	36.0
TraesCS6A01G016900.1	Wheat	cytosol	40.51	35.96
Zm00001d007586_P001	Maize	cytosol	43.67	35.94
Zm00001d007659_P001	Maize	cytosol	43.67	35.94
GSMUA_Achr4P25740_001	Banana	cytosol	33.54	35.81
TraesCS7A01G565800.1	Wheat	cytosol	39.87	35.8
TraesCS7B01G492500.1	Wheat	cytosol	39.87	35.8
VIT_15s0045g00490.t01	Wine grape	cytosol	34.18	35.76
PGSC0003DMT400096238	Potato	cytosol	33.54	35.57
TraesCS4B01G337400.1	Wheat	cytosol	35.44	35.44
TraesCS6D01G020500.1	Wheat	cytosol	34.81	35.26
TraesCS7B01G492400.1	Wheat	cytosol	39.24	35.23
TraesCS5B01G372700.1	Wheat	cytosol	36.08	35.19
TraesCS3D01G077800.1	Wheat	cytosol	37.34	35.12
TraesCS7D01G545000.2	Wheat	cytosol	37.97	35.09
Zm00001d022618_P001	Maize	cytosol	37.97	35.09
TraesCS5D01G173200.1	Wheat	cytosol	39.87	35.0
TraesCS3A01G374400.1	Wheat	cytosol	36.08	34.97
PGSC0003DMT400086770	Potato	cytosol	27.85	34.92
TraesCS5A01G168900.1	Wheat	cytosol	39.87	34.62
Os09t0412050-00	Rice	cytosol	36.71	34.52
Os09t0275200-01	Rice	cytosol	34.81	34.38
TraesCS4A01G379700.1	Wheat	cytosol	32.28	34.23
TraesCS5D01G379900.1	Wheat	cytosol	31.65	34.01
Os07t0625600-00	Rice	cytosol	37.97	33.71
TraesCS5D01G176900.1	Wheat	cytosol	41.77	33.67
TraesCS5A01G172300.1	Wheat	cytosol	41.77	33.5
TraesCS5B01G169700.1	Wheat	cytosol	42.41	33.5
HORVU7Hr1G002220.1	Barley	cytosol, plastid	44.3	33.33
PGSC0003DMT400085417	Potato	cytosol	26.58	33.33
PGSC0003DMT400093338	Potato	cytosol	35.44	33.33
TraesCS6A01G017300.1	Wheat	cytosol	32.91	33.33
TraesCS3B01G406500.1	Wheat	cytosol	34.18	33.13
HORVU5Hr1G092210.1	Barley	cytosol	33.54	32.92
TraesCS2A01G574500.1	Wheat	cytosol	34.81	32.74
OQU76826	Sorghum	cytosol	35.44	32.37
VIT_19s0085g00190.t01	Wine grape	cytosol	31.65	31.85
GSMUA_Achr4P25750_001	Banana	cytosol	35.44	31.64
TraesCS7D01G544900.1	Wheat	cytosol	28.48	31.47
Os07t0625500-01	Rice	cytosol	33.54	30.46
PGSC0003DMT400096074	Potato	cytosol	31.01	28.49
Os07t0624900-00	Rice	cytosol	35.44	28.0
Zm00001d042677_P001	Maize	plastid	44.94	26.89
HORVU7Hr1G099790.1	Barley	cytosol, plastid	32.91	26.4
Os10t0438100-00	Rice	cytosol	36.71	26.36
Os02t0101600-00	Rice	cytosol	25.32	24.84
TraesCS1B01G156000.1	Wheat	cytosol	36.08	24.15
TraesCS1A01G129800.1	Wheat	cytosol	35.44	23.73
TraesCS1D01G138400.1	Wheat	cytosol	35.44	23.53
EER94185	Sorghum	cytosol	31.01	23.22
HORVU1Hr1G035930.1	Barley	cytosol	34.81	22.73
HORVU3Hr1G074970.1	Barley	cytosol, nucleus	24.68	15.48
OQU90298	Sorghum	cytosol	32.28	14.61
TraesCS3B01G340200.1	Wheat	cytosol	31.01	11.75
TraesCS3B01G340100.1	Wheat	nucleus	34.18	10.38
TraesCS3A01G297000.1	Wheat	cytosol	34.18	10.19
TraesCS3D01G305500.1	Wheat	cytosol	32.91	10.18

Protein Annotations

EntrezGene:107063499	MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	UniProt:M1DN42	PFAM:PF01466	PFAM:PF03931
EnsemblPlantsGene:PGSC0003DMG400041228	PGSC:PGSC0003DMG400041228	EnsemblPlants:PGSC0003DMT400091657	PIRSF:PIRSF028729	PANTHER:PTHR11165	PANTHER:PTHR11165:SF86
InterPro:SKP1	InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf	SMART:SM00512	SUPFAM:SSF54695
SUPFAM:SSF81382	InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	UniParc:UPI0002960953	RefSeq:XP_015170904.1	SEG:seg

Description

SKP1-like 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400041228]

Coordinates

chr11:-:3834358..3834834

Molecular Weight (calculated)

18427.9 Da

IEP (calculated)

4.518

GRAVY (calculated)

-0.624

Length

158 amino acids

Sequence
(BLAST)

001: MASKKLILKS SDGDEFEIEE SIAIQSGTIK NMIEDDYTLI PLPNVNTQKL ILIIEYMKKH AEKTNSNEED IKKFDKEFLK DKSYQNMFEL LVAANYLHIS
101: DLMNLLYQTI ANKIKNKSVN AVRQIFGIVN DYTPEEEERV REEHKWAHEG EEIDESLD

Best Arabidopsis Sequence Match ( AT4G34470.1 )
(BLAST)

001: MSSKMIVLMS SDGQSFEVEE AVAIQSQTIA HMVEDDCVAD GIPLANVESK ILVKVIEYCK KYHVDEANPI SEEDLNKWDE KFMDLEQSTI FELILAANYL
101: NIKSLFDLTC QTVADMIKGK TPEEIRSTFN IENDFTPEEE EAVRKENQWA FE

Arabidopsis Description

ASK12SKP1-like protein 12 [Source:UniProtKB/Swiss-Prot;Acc:O65674]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.