Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- golgi 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400068727 | Potato | cytosol | 91.33 | 91.33 |
| PGSC0003DMT400068720 | Potato | cytosol | 85.33 | 85.91 |
| Solyc10g055580.1.1 | Tomato | cytosol | 84.0 | 84.0 |
| PGSC0003DMT400024783 | Potato | cytosol | 84.0 | 84.0 |
| PGSC0003DMT400015825 | Potato | cytosol | 80.0 | 76.92 |
| PGSC0003DMT400015827 | Potato | cytosol | 76.67 | 72.78 |
| GSMUA_Achr10P... | Banana | cytosol | 76.67 | 72.33 |
| GSMUA_Achr4P04860_001 | Banana | cytosol | 75.33 | 70.62 |
| GSMUA_Achr4P05110_001 | Banana | cytosol | 75.33 | 70.19 |
| GSMUA_Achr9P24070_001 | Banana | cytosol | 74.0 | 68.94 |
| PGSC0003DMT400094745 | Potato | cytosol | 44.67 | 63.81 |
| PGSC0003DMT400088621 | Potato | cytosol | 46.67 | 59.83 |
| PGSC0003DMT400090609 | Potato | cytosol | 56.67 | 56.29 |
| PGSC0003DMT400038385 | Potato | cytosol | 56.0 | 55.63 |
| PGSC0003DMT400093573 | Potato | cytosol | 56.0 | 55.63 |
| PGSC0003DMT400088220 | Potato | cytosol | 56.0 | 55.63 |
| PGSC0003DMT400088820 | Potato | cytosol | 55.33 | 54.97 |
| PGSC0003DMT400097239 | Potato | cytosol | 53.33 | 52.98 |
| PGSC0003DMT400087694 | Potato | cytosol | 52.67 | 52.67 |
| PGSC0003DMT400093419 | Potato | cytosol | 52.0 | 51.66 |
| PGSC0003DMT400085217 | Potato | cytosol | 44.67 | 51.54 |
| GSMUA_Achr8P33930_001 | Banana | cytosol | 72.0 | 51.18 |
| PGSC0003DMT400088079 | Potato | cytosol | 37.33 | 48.7 |
| PGSC0003DMT400086770 | Potato | cytosol | 40.67 | 48.41 |
| PGSC0003DMT400085417 | Potato | cytosol | 40.0 | 47.62 |
| PGSC0003DMT400096238 | Potato | cytosol | 44.0 | 44.3 |
| PGSC0003DMT400090072 | Potato | cytosol | 30.0 | 44.12 |
| PGSC0003DMT400095953 | Potato | cytosol | 45.33 | 43.04 |
| PGSC0003DMT400091657 | Potato | cytosol | 44.67 | 42.41 |
| PGSC0003DMT400093338 | Potato | cytosol | 47.33 | 42.26 |
| PGSC0003DMT400089461 | Potato | cytosol | 34.67 | 40.94 |
| PGSC0003DMT400019185 | Potato | cytosol | 45.33 | 37.78 |
| PGSC0003DMT400096074 | Potato | cytosol | 40.0 | 34.88 |
| PGSC0003DMT400019237 | Potato | cytosol | 38.67 | 30.69 |
Protein Annotations
| EntrezGene:102591070 | MapMan:19.2.2.8.1.1 | Gene3D:3.30.710.10 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 | UniProt:M1CJE6 | PFAM:PF01466 | PFAM:PF03931 |
| EnsemblPlantsGene:PGSC0003DMG400026722 | PGSC:PGSC0003DMG400026722 | EnsemblPlants:PGSC0003DMT400068726 | PIRSF:PIRSF028729 | PANTHER:PTHR11165 | PANTHER:PTHR11165:SF89 |
| InterPro:SKP1 | InterPro:SKP1-like | InterPro:SKP1-like_dim_sf | InterPro:SKP1/BTB/POZ_sf | SMART:SM00512 | SUPFAM:SSF54695 |
| SUPFAM:SSF81382 | InterPro:Skp1_comp_POZ | InterPro:Skp1_comp_dimer | UniParc:UPI00029604CB | RefSeq:XP_006360899.1 | SEG:seg |
Description
SKP1 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400026722]
Coordinates
chr10:+:47297946..47300998
Molecular Weight (calculated)
17070.2 Da
IEP (calculated)
4.127
GRAVY (calculated)
-0.335
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MIVLRSSDGE TFEVDEAVAL ESPTIKHMIE DDCTDTSISL PNVTSKILVK VIEYCKRHVE VPKAEDKTAE VDLKTFDAEF VKVDQSTLYD LMLAANYLNI
101: KSLLDLTCQT VADMIKGKTP EEISKTFDIK DDLTPEEEEE FRRENAWAFE
101: KSLLDLTCQT VADMIKGKTP EEISKTFDIK DDLTPEEEEE FRRENAWAFE
001: MSTVRKITLK SSDGENFEID EAVALESQTI KHMIEDDCTD NGIPLPNVTS KILSKVIEYC KRHVEAAEKS ETTADAAAAT TTTTVASGSS DEDLKTWDSE
101: FIKVDQGTLF DLILAANYLN IKGLLDLTCQ TVADMIKGKT PEEIRKTFNI KNDFTPEEEE EVRRENQWAF E
101: FIKVDQGTLF DLILAANYLN IKGLLDLTCQ TVADMIKGKT PEEIRKTFNI KNDFTPEEEE EVRRENQWAF E
Arabidopsis Description
SKP1BSKP1-like protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9FHW7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.