Factsheet for PGSC0003DMT400088220

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400086770	Potato	cytosol	76.16	91.27
PGSC0003DMT400038385	Potato	cytosol	90.73	90.73
PGSC0003DMT400090609	Potato	cytosol	90.73	90.73
PGSC0003DMT400088820	Potato	cytosol	90.07	90.07
PGSC0003DMT400093573	Potato	cytosol	89.4	89.4
PGSC0003DMT400088079	Potato	cytosol	66.89	87.83
PGSC0003DMT400097239	Potato	cytosol	86.09	86.09
PGSC0003DMT400085417	Potato	cytosol	70.86	84.92
PGSC0003DMT400087694	Potato	cytosol	84.11	84.67
PGSC0003DMT400085217	Potato	cytosol	72.85	84.62
PGSC0003DMT400088621	Potato	cytosol	64.9	83.76
PGSC0003DMT400093419	Potato	cytosol	82.78	82.78
PGSC0003DMT400096238	Potato	cytosol	64.9	65.77
PGSC0003DMT400093338	Potato	cytosol	66.89	60.12
PGSC0003DMT400068727	Potato	cytosol	56.95	57.33
PGSC0003DMT400024783	Potato	cytosol	56.29	56.67
PGSC0003DMT400068726	Potato	cytosol	55.63	56.0
OQU87046	Sorghum	cytosol	49.01	55.22
TraesCS3B01G566400.1	Wheat	cytosol	51.66	54.55
PGSC0003DMT400015825	Potato	cytosol	56.29	54.49
TraesCS4A01G366400.1	Wheat	cytosol	58.94	54.27
TraesCS2D01G560400.1	Wheat	cytosol	58.28	53.66
TraesCS2D01G560500.1	Wheat	cytosol	58.28	53.66
TraesCS6B01G053400.1	Wheat	cytosol	48.34	53.28
TraesCS2D01G560700.1	Wheat	cytosol	57.62	53.05
TraesCS5A01G462800.1	Wheat	cytosol	47.02	52.99
TraesCS6A01G000300.1	Wheat	cytosol	56.95	52.76
TraesCS6B01G004300.1	Wheat	cytosol	56.95	52.76
TraesCS5B01G474100.1	Wheat	cytosol	56.29	52.47
TraesCS2D01G560300.1	Wheat	cytosol	56.95	52.44
PGSC0003DMT400068720	Potato	cytosol	51.66	52.35
TraesCS3B01G308600.1	Wheat	cytosol	56.29	52.15
TraesCS7D01G016900.1	Wheat	cytosol	58.28	52.07
TraesCS6D01G045500.1	Wheat	cytosol	57.62	51.48
TraesCS4A01G472600.1	Wheat	cytosol	58.28	51.16
TraesCS7A01G020600.1	Wheat	cytosol	58.28	51.16
TraesCS5D01G475600.1	Wheat	cytosol	58.94	50.86
PGSC0003DMT400015827	Potato	cytosol	52.98	50.63
TraesCS2B01G590600.1	Wheat	cytosol	58.28	50.57
Os11t0456300-01	Rice	plasma membrane	57.62	50.29
TraesCS2D01G420100.1	Wheat	cytosol	58.28	50.29
EES09697	Sorghum	cytosol	58.28	50.0
Zm00001d049230_P001	Maize	mitochondrion	58.28	50.0
TraesCS5D01G475400.1	Wheat	golgi, plastid, unclear	57.62	49.71
TraesCS6D01G001600.1	Wheat	cytosol	57.62	49.71
TraesCS7D01G194900.1	Wheat	cytosol	57.62	49.71
TraesCS3D01G509600.1	Wheat	cytosol	56.29	49.42
TraesCS7B01G098900.1	Wheat	cytosol	56.95	49.14
EES06093	Sorghum	cytosol	54.97	49.11
TraesCS6D01G044400.1	Wheat	cytosol	43.71	48.89
TraesCS7A01G193600.1	Wheat	cytosol	43.71	48.53
HORVU5Hr1G110810.1	Barley	cytosol	49.01	48.05
EES13900	Sorghum	cytosol	52.98	47.62
TraesCS2B01G442100.1	Wheat	mitochondrion	55.63	47.19
PGSC0003DMT400096074	Potato	cytosol	53.64	47.09
Os09t0539500-01	Rice	cytosol, plasma membrane, plastid	54.3	46.86
HORVU5Hr1G110840.1	Barley	cytosol	54.3	46.59
HORVU2Hr1G115410.2	Barley	cytosol	51.66	46.43
EER99267	Sorghum	cytosol	52.98	46.24
TraesCS7A01G498800.1	Wheat	cytosol	50.33	46.06
HORVU5Hr1G110850.1	Barley	cytosol	53.64	45.51
HORVU5Hr1G110760.2	Barley	cytosol	47.68	45.28
HORVU5Hr1G110720.2	Barley	cytosol	52.98	44.94
TraesCS2A01G522300.1	Wheat	cytosol	52.32	44.89
HORVU2Hr1G115400.1	Barley	cytosol	52.32	44.63
HORVU2Hr1G115420.1	Barley	cytosol	52.32	44.63
HORVU5Hr1G090360.1	Barley	cytosol	52.32	44.38
HORVU5Hr1G110800.1	Barley	cytosol	52.32	44.38
HORVU5Hr1G110820.2	Barley	cytosol	52.32	44.38
HORVU5Hr1G110830.3	Barley	cytosol	52.32	44.13
HORVU2Hr1G115380.1	Barley	cytosol	52.32	43.89
HORVU3Hr1G089860.3	Barley	cytosol	51.66	43.33
HORVU7Hr1G099860.2	Barley	cytosol, mitochondrion, nucleus	49.67	42.86
TraesCS6D01G002600.1	Wheat	cytosol	49.67	42.86
HORVU7Hr1G103140.2	Barley	cytosol	50.99	42.78
HORVU7Hr1G099950.1	Barley	cytosol	49.01	42.77
Os09t0273800-01	Rice	cytosol	47.02	42.52
HORVU7Hr1G099840.1	Barley	cytosol	49.01	42.29
TraesCS2D01G524400.1	Wheat	cytosol	45.03	41.98
TraesCS7D01G544900.1	Wheat	cytosol	39.74	41.96
HORVU5Hr1G110790.1	Barley	cytosol	28.48	41.75
CDY03015	Canola	cytosol	41.72	41.72
Os08t0375500-00	Rice	cytosol	46.36	41.42
PGSC0003DMT400090072	Potato	cytosol	27.81	41.18
TraesCS5B01G165700.1	Wheat	cytosol	47.68	41.14
TraesCS4B01G337400.1	Wheat	cytosol	43.05	41.14
TraesCS5D01G105800.1	Wheat	cytosol	39.74	41.1
HORVU7Hr1G002220.1	Barley	cytosol, plastid	56.95	40.95
TraesCS7D01G545000.2	Wheat	cytosol	46.36	40.94
TraesCS7A01G565800.1	Wheat	cytosol	47.68	40.91
TraesCS7B01G492200.1	Wheat	cytosol	47.68	40.91
TraesCS7B01G492300.1	Wheat	cytosol	47.68	40.91
TraesCS7B01G492500.1	Wheat	cytosol	47.68	40.91
Os08t0375700-00	Rice	cytosol	45.7	40.83
Os09t0412050-00	Rice	cytosol	45.03	40.48
TraesCS7B01G492400.1	Wheat	cytosol	47.02	40.34
Os09t0274800-00	Rice	cytosol	45.7	40.12
TraesCS5D01G173200.1	Wheat	cytosol	47.68	40.0
TraesCS5A01G168900.1	Wheat	cytosol	47.68	39.56
TraesCS6B01G008800.1	Wheat	cytosol	45.7	39.43
VIT_10s0003g05820.t01	Wine grape	cytosol	41.72	38.89
TraesCS5B01G099600.1	Wheat	cytosol	45.03	38.86
TraesCS5A01G093500.1	Wheat	cytosol	42.38	38.79
PGSC0003DMT400095953	Potato	cytosol	40.4	38.61
GSMUA_Achr4P25740_001	Banana	cytosol	37.75	38.51
Zm00001d022618_P001	Maize	cytosol	43.05	38.01
Zm00001d007590_P001	Maize	cytosol	47.02	37.77
VIT_15s0045g00490.t01	Wine grape	cytosol	37.75	37.75
TraesCS6A01G016900.1	Wheat	cytosol	44.37	37.64
TraesCS4A01G379700.1	Wheat	cytosol	37.09	37.58
VIT_19s0085g00180.t01	Wine grape	cytosol	37.75	37.5
TraesCS3A01G374400.1	Wheat	cytosol	40.4	37.42
Os06t0113800-00	Rice	cytosol	41.06	37.35
PGSC0003DMT400091657	Potato	cytosol	39.07	37.34
PGSC0003DMT400094745	Potato	cytosol	25.83	37.14
Zm00001d007659_P001	Maize	cytosol	47.02	36.98
TraesCS6B01G024700.1	Wheat	cytosol	41.06	36.9
TraesCS7A01G565700.1	Wheat	cytosol	41.72	36.84
TraesCS3B01G406500.1	Wheat	cytosol	39.74	36.81
PGSC0003DMT400019185	Potato	cytosol	43.71	36.67
Zm00001d007589_P001	Maize	cytosol	47.02	36.6
TraesCS5B01G372700.1	Wheat	cytosol	39.07	36.42
TraesCS5D01G176900.1	Wheat	cytosol	47.02	36.22
TraesCS3B01G092200.1	Wheat	cytosol	39.74	36.14
Os07t0625600-00	Rice	cytosol	42.38	35.96
Zm00001d007586_P001	Maize	cytosol	45.7	35.94
TraesCS5A01G172300.1	Wheat	cytosol	46.36	35.53
TraesCS5B01G169700.1	Wheat	cytosol	47.02	35.5
TraesCS5D01G379900.1	Wheat	cytosol	34.44	35.37
TraesCS2A01G574500.1	Wheat	cytosol	39.07	35.12
TraesCS3D01G077800.1	Wheat	cytosol	39.07	35.12
PGSC0003DMT400089461	Potato	cytosol	29.14	34.65
TraesCS1D01G201900.1	Wheat	cytosol	37.75	34.34
HORVU5Hr1G092210.1	Barley	cytosol	36.42	34.16
VIT_19s0085g00190.t01	Wine grape	cytosol	35.1	33.76
GSMUA_Achr4P25750_001	Banana	cytosol	39.07	33.33
KRH13748	Soybean	cytosol	39.74	32.79
TraesCS6D01G020500.1	Wheat	cytosol	33.77	32.69
Os09t0275200-01	Rice	cytosol	34.44	32.5
OQU76826	Sorghum	cytosol	37.09	32.37
Os07t0625500-01	Rice	cytosol	37.09	32.18
TraesCS6A01G017300.1	Wheat	cytosol	33.11	32.05
HORVU7Hr1G099790.1	Barley	cytosol, plastid	41.06	31.47
PGSC0003DMT400019237	Potato	cytosol	38.41	30.69
Os07t0624900-00	Rice	cytosol	39.07	29.5
Zm00001d042677_P001	Maize	plastid	49.67	28.41
Os02t0101600-00	Rice	cytosol	29.14	27.33
Os10t0438100-00	Rice	cytosol	39.74	27.27
TraesCS1B01G156000.1	Wheat	cytosol	41.72	26.69
TraesCS1A01G129800.1	Wheat	cytosol	41.06	26.27
TraesCS1D01G138400.1	Wheat	cytosol	41.06	26.05
HORVU1Hr1G035930.1	Barley	cytosol	40.4	25.21
EER94185	Sorghum	cytosol	33.77	24.17
HORVU3Hr1G074970.1	Barley	cytosol, nucleus	29.8	17.86
OQU90298	Sorghum	cytosol	40.4	17.48
TraesCS3B01G340200.1	Wheat	cytosol	37.75	13.67
TraesCS3D01G305500.1	Wheat	cytosol	40.4	11.94
TraesCS3A01G297000.1	Wheat	cytosol	41.72	11.89
TraesCS3B01G340100.1	Wheat	nucleus	36.42	10.58

Protein Annotations

EntrezGene:102602109	MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	UniProt:M1DFH3	PFAM:PF01466	PFAM:PF03931
EnsemblPlantsGene:PGSC0003DMG400037791	PGSC:PGSC0003DMG400037791	EnsemblPlants:PGSC0003DMT400088220	PIRSF:PIRSF028729	PANTHER:PTHR11165	PANTHER:PTHR11165:SF89
InterPro:SKP1	InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf	SMART:SM00512	SUPFAM:SSF54695
SUPFAM:SSF81382	InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	UniParc:UPI000294F41C	RefSeq:XP_006341317.1	:

Description

SKP1 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400037791]

Coordinates

chr12:-:38213801..38214256

Molecular Weight (calculated)

17524.1 Da

IEP (calculated)

4.699

GRAVY (calculated)

-0.242

Length

151 amino acids

Sequence
(BLAST)

001: MSSSTKFLTL KTYDGKEFVL DEVIVVRSQT IKNMIEDDCV SNVISLPNVY SKIMTKVIEY WKKHSEEGVS KAMLMDFDKA FVKVHHSILH ALILAANFLN
101: DKEILDMMCQ EVADRIKGKT PEEICKEFDI KNYFTPEEEE EICKENAWAF E

Best Arabidopsis Sequence Match ( AT1G20140.1 )
(BLAST)

001: MAETKKMIIL KSSDGESFEI EEAVAVKSQT IKHMIEDDCA DNGIPLPNVT GAILAKVIEY CKKHVEAAAE AGGDKDFYGS AENDELKNWD SEFVKVDQPT
101: LFDLILAANY LNIGGLLDLT CKAVADQMRG KTPEQMRAHF NIKNDYTPEE EAEVRNENKW AFE

Arabidopsis Description

ASK4SK4 [Source:UniProtKB/TrEMBL;Acc:A0A178W187]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.