Factsheet for TraesCS6D01G001600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

cytosol: 23065282
plasma membrane: 23065282

golgi: 23128297

gfp PMID: 23065282 doi

MJ Hong, DY Kim, YW Seo

Division of Biotechnology, Korea University, Anam-Dong, Seongbuk-Gu, Seoul, 136-701, Republic of Korea.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G000300.1	Wheat	cytosol	92.0	98.77
TraesCS6B01G004300.1	Wheat	cytosol	91.43	98.16
TraesCS7D01G016900.1	Wheat	cytosol	92.57	95.86
TraesCS2D01G560500.1	Wheat	cytosol	82.86	88.41
TraesCS2D01G560400.1	Wheat	cytosol	81.71	87.2
TraesCS2D01G560300.1	Wheat	cytosol	81.71	87.2
TraesCS2D01G560700.1	Wheat	cytosol	80.57	85.98
TraesCS6D01G045500.1	Wheat	cytosol	81.71	84.62
TraesCS5D01G475600.1	Wheat	cytosol	84.57	84.57
TraesCS2D01G420100.1	Wheat	cytosol	84.0	84.0
TraesCS5D01G475400.1	Wheat	golgi, plastid, unclear	82.86	82.86
TraesCS3D01G509600.1	Wheat	cytosol	80.57	81.98
TraesCS6D01G044400.1	Wheat	cytosol	61.71	80.0
TraesCS7D01G194900.1	Wheat	cytosol	79.43	79.43
TraesCS2D01G524400.1	Wheat	cytosol	69.14	74.69
TraesCS6D01G002600.1	Wheat	cytosol	70.86	70.86
TraesCS5D01G105800.1	Wheat	cytosol	58.86	70.55
TraesCS7D01G545000.2	Wheat	cytosol	67.43	69.01
TraesCS7D01G544900.1	Wheat	cytosol	55.43	67.83
TraesCS3D01G016600.1	Wheat	cytosol	63.43	67.27
TraesCS5D01G337100.1	Wheat	cytosol	61.14	64.46
TraesCS5D01G337000.1	Wheat	cytosol	61.14	64.46
TraesCS6D01G020500.1	Wheat	cytosol	56.57	63.46
TraesCS5D01G173200.1	Wheat	cytosol	64.0	62.22
PGSC0003DMT400088621	Potato	cytosol	41.14	61.54
Solyc03g112710.1.1	Tomato	cytosol	52.57	60.93
PGSC0003DMT400093573	Potato	cytosol	52.0	60.26
PGSC0003DMT400038385	Potato	cytosol	52.0	60.26
PGSC0003DMT400090609	Potato	cytosol	52.0	60.26
CDY03015	Canola	cytosol	51.43	59.6
PGSC0003DMT400088820	Potato	cytosol	50.86	58.94
PGSC0003DMT400088220	Potato	cytosol	49.71	57.62
PGSC0003DMT400093419	Potato	cytosol	49.14	56.95
TraesCS5D01G176900.1	Wheat	cytosol	62.86	56.12
PGSC0003DMT400087694	Potato	cytosol	48.0	56.0
PGSC0003DMT400097239	Potato	cytosol	48.0	55.63
PGSC0003DMT400085217	Potato	cytosol	40.57	54.62
VIT_19s0085g00180.t01	Wine grape	cytosol	47.43	54.61
Os02t0101600-00	Rice	cytosol	48.57	52.8
PGSC0003DMT400088079	Potato	cytosol	34.29	52.17
TraesCS5D01G379900.1	Wheat	cytosol	43.43	51.7
PGSC0003DMT400086770	Potato	cytosol	37.14	51.59
PGSC0003DMT400090072	Potato	cytosol	29.71	50.98
Solyc11g008230.1.1	Tomato	cytosol	45.71	50.63
PGSC0003DMT400096238	Potato	cytosol	42.86	50.34
TraesCS5D01G337200.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	70.86	50.2
PGSC0003DMT400085417	Potato	cytosol	36.0	50.0
VIT_10s0003g05820.t01	Wine grape	cytosol	45.71	49.38
GSMUA_Achr4P25740_001	Banana	cytosol	41.71	49.32
VIT_15s0045g00490.t01	Wine grape	cytosol	42.29	49.01
TraesCS3D01G077800.1	Wheat	cytosol	46.86	48.81
PGSC0003DMT400095953	Potato	cytosol	44.0	48.73
PGSC0003DMT400091657	Potato	cytosol	42.86	47.47
TraesCS1D01G201900.1	Wheat	cytosol	44.57	46.99
VIT_19s0085g00190.t01	Wine grape	cytosol	41.71	46.5
PGSC0003DMT400093338	Potato	cytosol	44.57	46.43
PGSC0003DMT400019185	Potato	cytosol	47.43	46.11
Solyc11g008400.1.1	Tomato	cytosol	46.86	45.56
Solyc03g093190.1.1	Tomato	cytosol	31.43	45.08
GSMUA_Achr4P25750_001	Banana	cytosol	44.0	43.5
PGSC0003DMT400089461	Potato	cytosol	30.86	42.52
Solyc11g008240.1.1	Tomato	cytosol	38.29	42.41
KRH13748	Soybean	cytosol	41.71	39.89
PGSC0003DMT400096074	Potato	cytosol	36.57	37.21
PGSC0003DMT400019237	Potato	cytosol	38.29	35.45
TraesCS1D01G138400.1	Wheat	cytosol	47.43	34.87
Solyc11g008420.1.1	Tomato	cytosol	35.43	32.8
TraesCS3D01G305500.1	Wheat	cytosol	46.29	15.85

Protein Annotations

MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019538	PFAM:PF01466	PFAM:PF03931	PIRSF:PIRSF028729	PANTHER:PTHR11165
PANTHER:PTHR11165:SF89	InterPro:SKP1	InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf	SMART:SM00512
SUPFAM:SSF54695	SUPFAM:SSF81382	InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	EnsemblPlantsGene:TraesCS6D01G001600	EnsemblPlants:TraesCS6D01G001600.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:803603..804859

Molecular Weight (calculated)

19060.3 Da

IEP (calculated)

4.185

GRAVY (calculated)

-0.403

Length

175 amino acids

Sequence
(BLAST)

001: MAAAGDAGEK KMITLKSSDG EEFEVEEAVA MESQTIRHMI EDDCADNGIP LPNVNSKILS KVIEYCNKHV QAKPADGAAA GAGAGASDAA PAAPAEDLKN
101: WDAEFVKVDQ ATLFDLILAA NYLNIKGLLD LTCQTVADMI KGKTPEEIRK TFNIKNDFTP EEEEEIRREN QWAFE

Best Arabidopsis Sequence Match ( AT1G20140.1 )
(BLAST)

001: MAETKKMIIL KSSDGESFEI EEAVAVKSQT IKHMIEDDCA DNGIPLPNVT GAILAKVIEY CKKHVEAAAE AGGDKDFYGS AENDELKNWD SEFVKVDQPT
101: LFDLILAANY LNIGGLLDLT CKAVADQMRG KTPEQMRAHF NIKNDYTPEE EAEVRNENKW AFE

Arabidopsis Description

ASK4SK4 [Source:UniProtKB/TrEMBL;Acc:A0A178W187]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.