Factsheet for GSMUA_Achr4P25750_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P04860_001	Banana	cytosol	45.2	50.0
GSMUA_Achr4P05110_001	Banana	cytosol	45.2	49.69
TraesCS6D01G044400.1	Wheat	cytosol	37.85	49.63
GSMUA_Achr9P24070_001	Banana	cytosol	44.63	49.07
TraesCS2D01G560500.1	Wheat	cytosol	44.63	48.17
GSMUA_Achr10P...	Banana	cytosol	42.94	47.8
GSMUA_Achr8P13060_001	Banana	cytosol	45.2	47.62
TraesCS2D01G560300.1	Wheat	cytosol	44.07	47.56
GSMUA_Achr4P25740_001	Banana	cytosol	39.55	47.3
TraesCS2D01G560400.1	Wheat	cytosol	43.5	46.95
TraesCS2D01G560700.1	Wheat	cytosol	43.5	46.95
TraesCS4A01G366400.1	Wheat	cytosol	42.94	46.34
TraesCS5D01G475400.1	Wheat	golgi, plastid, unclear	45.76	46.29
TraesCS7D01G194900.1	Wheat	cytosol	45.76	46.29
TraesCS5A01G462800.1	Wheat	cytosol	35.03	46.27
TraesCS3B01G308600.1	Wheat	cytosol	42.37	46.01
TraesCS2B01G590600.1	Wheat	cytosol	45.2	45.98
TraesCS3D01G509600.1	Wheat	cytosol	44.63	45.93
TraesCS5B01G474100.1	Wheat	cytosol	41.81	45.68
TraesCS6D01G045500.1	Wheat	cytosol	43.5	45.56
TraesCS3B01G566400.1	Wheat	cytosol	36.72	45.45
HORVU2Hr1G115410.2	Barley	cytosol	42.94	45.24
TraesCS2D01G420100.1	Wheat	cytosol	44.63	45.14
TraesCS5D01G475600.1	Wheat	cytosol	44.63	45.14
HORVU5Hr1G110850.1	Barley	cytosol	45.2	44.94
TraesCS6A01G000300.1	Wheat	cytosol	41.24	44.79
TraesCS6B01G004300.1	Wheat	cytosol	41.24	44.79
VIT_19s0085g00180.t01	Wine grape	cytosol	38.42	44.74
TraesCS7B01G098900.1	Wheat	cytosol	44.07	44.57
TraesCS7D01G016900.1	Wheat	cytosol	42.37	44.38
HORVU2Hr1G115420.1	Barley	cytosol	44.07	44.07
OQU87046	Sorghum	cytosol	33.33	44.03
TraesCS5B01G099600.1	Wheat	cytosol	43.5	44.0
TraesCS6D01G001600.1	Wheat	cytosol	43.5	44.0
Os11t0456300-01	Rice	plasma membrane	42.94	43.93
HORVU2Hr1G115380.1	Barley	cytosol	44.63	43.89
HORVU3Hr1G089860.3	Barley	cytosol	44.63	43.89
HORVU5Hr1G110720.2	Barley	cytosol	44.07	43.82
EES09697	Sorghum	cytosol	43.5	43.75
Zm00001d049230_P001	Maize	mitochondrion	43.5	43.75
CDY03015	Canola	cytosol	37.29	43.71
TraesCS4A01G472600.1	Wheat	cytosol	42.37	43.6
TraesCS7A01G020600.1	Wheat	cytosol	42.37	43.6
HORVU2Hr1G115400.1	Barley	cytosol	43.5	43.5
Os09t0539500-01	Rice	cytosol, plasma membrane, plastid	42.94	43.43
EER99267	Sorghum	cytosol	42.37	43.35
HORVU7Hr1G103140.2	Barley	cytosol	44.07	43.33
EES06093	Sorghum	cytosol	41.24	43.2
HORVU5Hr1G110840.1	Barley	cytosol	42.94	43.18
TraesCS6B01G053400.1	Wheat	cytosol	33.33	43.07
TraesCS7A01G498800.1	Wheat	cytosol	40.11	43.03
HORVU5Hr1G110800.1	Barley	cytosol	42.94	42.7
HORVU5Hr1G110820.2	Barley	cytosol	42.94	42.7
TraesCS2A01G522300.1	Wheat	cytosol	42.37	42.61
TraesCS2D01G524400.1	Wheat	cytosol	38.98	42.59
Os09t0273800-01	Rice	cytosol	40.11	42.52
TraesCS5A01G093500.1	Wheat	cytosol	39.55	42.42
Os09t0412050-00	Rice	cytosol	40.11	42.26
HORVU5Hr1G110810.1	Barley	cytosol	36.72	42.21
TraesCS2B01G442100.1	Wheat	mitochondrion	42.37	42.13
GSMUA_Achr11P...	Banana	cytosol	37.29	42.04
TraesCS7A01G193600.1	Wheat	cytosol	32.2	41.91
HORVU5Hr1G110830.3	Barley	cytosol	42.37	41.9
EES13900	Sorghum	cytosol	39.55	41.67
TraesCS4B01G337400.1	Wheat	cytosol	36.72	41.14
PGSC0003DMT400038385	Potato	cytosol	35.03	41.06
PGSC0003DMT400096238	Potato	cytosol	34.46	40.94
VIT_10s0003g05820.t01	Wine grape	cytosol	37.29	40.74
HORVU7Hr1G099840.1	Barley	cytosol	40.11	40.57
TraesCS6D01G002600.1	Wheat	cytosol	40.11	40.57
TraesCS5D01G105800.1	Wheat	cytosol	33.33	40.41
PGSC0003DMT400088820	Potato	cytosol	34.46	40.4
PGSC0003DMT400093573	Potato	cytosol	34.46	40.4
VIT_15s0045g00490.t01	Wine grape	cytosol	34.46	40.4
Os08t0375500-00	Rice	cytosol	38.42	40.24
Os08t0375700-00	Rice	cytosol	38.42	40.24
PGSC0003DMT400088621	Potato	cytosol	26.55	40.17
HORVU5Hr1G090360.1	Barley	cytosol	40.11	39.89
HORVU5Hr1G110790.1	Barley	cytosol	23.16	39.81
TraesCS3B01G092200.1	Wheat	cytosol	37.29	39.76
PGSC0003DMT400090609	Potato	cytosol	33.9	39.74
Solyc03g112710.1.1	Tomato	cytosol	33.9	39.74
HORVU5Hr1G110760.2	Barley	cytosol	35.59	39.62
TraesCS5B01G165700.1	Wheat	cytosol	38.98	39.43
HORVU7Hr1G099950.1	Barley	cytosol	38.42	39.31
PGSC0003DMT400093338	Potato	cytosol	37.29	39.29
TraesCS3D01G077800.1	Wheat	cytosol	37.29	39.29
Zm00001d022618_P001	Maize	cytosol	37.85	39.18
Os06t0113800-00	Rice	cytosol	36.72	39.16
PGSC0003DMT400088220	Potato	cytosol	33.33	39.07
PGSC0003DMT400093419	Potato	cytosol	33.33	39.07
PGSC0003DMT400097239	Potato	cytosol	33.33	39.07
TraesCS6B01G008800.1	Wheat	cytosol	38.42	38.86
TraesCS7D01G545000.2	Wheat	cytosol	37.29	38.6
TraesCS1D01G201900.1	Wheat	cytosol	36.16	38.55
TraesCS5D01G173200.1	Wheat	cytosol	38.98	38.33
HORVU7Hr1G099860.2	Barley	cytosol, mitochondrion, nucleus	37.85	38.29
PGSC0003DMT400090072	Potato	cytosol	22.03	38.24
VIT_19s0085g00190.t01	Wine grape	cytosol	33.9	38.22
Os09t0275200-01	Rice	cytosol	34.46	38.12
TraesCS6B01G024700.1	Wheat	cytosol	36.16	38.1
PGSC0003DMT400087694	Potato	cytosol	32.2	38.0
TraesCS5A01G168900.1	Wheat	cytosol	38.98	37.91
TraesCS7D01G544900.1	Wheat	cytosol	30.51	37.76
GSMUA_Achr3P26800_001	Banana	cytosol	33.9	37.5
TraesCS7A01G565800.1	Wheat	cytosol	37.29	37.5
TraesCS7B01G492200.1	Wheat	cytosol	37.29	37.5
TraesCS7B01G492300.1	Wheat	cytosol	37.29	37.5
TraesCS7B01G492500.1	Wheat	cytosol	37.29	37.5
Zm00001d007590_P001	Maize	cytosol	39.55	37.23
Os09t0274800-00	Rice	cytosol	36.16	37.21
TraesCS5B01G372700.1	Wheat	cytosol	33.9	37.04
Zm00001d007586_P001	Maize	cytosol	40.11	36.98
TraesCS5D01G379900.1	Wheat	cytosol	30.51	36.73
PGSC0003DMT400095953	Potato	cytosol	32.77	36.71
Solyc11g008230.1.1	Tomato	cytosol	32.77	36.71
GSMUA_Achr8P33930_001	Banana	cytosol	43.5	36.49
Zm00001d007589_P001	Maize	cytosol	39.55	36.08
TraesCS6A01G016900.1	Wheat	cytosol	36.16	35.96
Zm00001d007659_P001	Maize	cytosol	38.98	35.94
TraesCS2A01G574500.1	Wheat	cytosol	33.9	35.71
TraesCS7A01G565700.1	Wheat	cytosol	34.46	35.67
PGSC0003DMT400091657	Potato	cytosol	31.64	35.44
OQU76826	Sorghum	cytosol	34.46	35.26
TraesCS7B01G492400.1	Wheat	cytosol	35.03	35.23
TraesCS5D01G176900.1	Wheat	cytosol	38.98	35.2
PGSC0003DMT400019185	Potato	cytosol	35.59	35.0
Solyc11g008400.1.1	Tomato	cytosol	35.59	35.0
PGSC0003DMT400086770	Potato	cytosol	24.86	34.92
Solyc11g008240.1.1	Tomato	cytosol	31.07	34.81
HORVU5Hr1G092210.1	Barley	cytosol	31.64	34.78
HORVU7Hr1G002220.1	Barley	cytosol, plastid	41.24	34.76
PGSC0003DMT400085217	Potato	cytosol	25.42	34.62
TraesCS6A01G017300.1	Wheat	cytosol	30.51	34.62
TraesCS6D01G020500.1	Wheat	cytosol	30.51	34.62
TraesCS5A01G172300.1	Wheat	cytosol	38.42	34.52
PGSC0003DMT400088079	Potato	cytosol	22.03	33.91
TraesCS3A01G374400.1	Wheat	cytosol	31.07	33.74
TraesCS3B01G406500.1	Wheat	cytosol	31.07	33.74
TraesCS4A01G379700.1	Wheat	cytosol	28.25	33.56
TraesCS5B01G169700.1	Wheat	cytosol	37.85	33.5
PGSC0003DMT400089461	Potato	cytosol	23.73	33.07
Os07t0625600-00	Rice	cytosol	32.77	32.58
PGSC0003DMT400085417	Potato	cytosol	22.6	31.75
Os07t0625500-01	Rice	cytosol	31.07	31.61
PGSC0003DMT400096074	Potato	cytosol	29.94	30.81
PGSC0003DMT400019237	Potato	cytosol	32.77	30.69
TraesCS1B01G156000.1	Wheat	cytosol	40.68	30.51
Os07t0624900-00	Rice	cytosol	34.46	30.5
Solyc11g008420.1.1	Tomato	cytosol	32.2	30.16
TraesCS1A01G129800.1	Wheat	cytosol	40.11	30.08
TraesCS1D01G138400.1	Wheat	cytosol	40.11	29.83
Solyc03g093190.1.1	Tomato	cytosol	20.34	29.51
HORVU7Hr1G099790.1	Barley	cytosol, plastid	32.77	29.44
Os02t0101600-00	Rice	cytosol	26.55	29.19
HORVU1Hr1G035930.1	Barley	cytosol	39.55	28.93
Os10t0438100-00	Rice	cytosol	35.03	28.18
KRH13748	Soybean	cytosol	28.81	27.87
Zm00001d042677_P001	Maize	plastid	40.68	27.27
EER94185	Sorghum	cytosol	31.64	26.54
OQU90298	Sorghum	cytosol	36.72	18.62
HORVU3Hr1G074970.1	Barley	cytosol, nucleus	24.86	17.46
TraesCS3B01G340200.1	Wheat	cytosol	32.2	13.67
TraesCS3D01G305500.1	Wheat	cytosol	35.59	12.33
TraesCS3B01G340100.1	Wheat	nucleus	35.59	12.12
TraesCS3A01G297000.1	Wheat	cytosol	36.16	12.08

Protein Annotations

MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	ncoils:Coil	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr4G25750_001	EnsemblPlants:GSMUA_Achr4P25750_001	EnsemblPlants:GSMUA_Achr4T25750_001
UniProt:M0SS36	PFAM:PF01466	PFAM:PF03931	PIRSF:PIRSF028729	PANTHER:PTHR11165	PANTHER:PTHR11165:SF89
InterPro:SKP1	InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf	SMART:SM00512	SUPFAM:SSF54695
SUPFAM:SSF81382	InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	UniParc:UPI000294E423	:	:

Description

SKP1-like protein 3 [Source:GMGC_GENE;Acc:GSMUA_Achr4G25750_001]

Coordinates

chr4:+:25150272..25150899

Molecular Weight (calculated)

20104.7 Da

IEP (calculated)

4.228

GRAVY (calculated)

-0.438

Length

177 amino acids

Sequence
(BLAST)

001: MASEEGKKMI TLKSMDGQEF QVEKEACAIS EMIKFVSDDC DTEDVIPVAN IRGNILAKVV EYMKKHLEFA SKKRSSDAGK EIAEGNEELV DVDEEIKAWN
101: NDFIKDVDTD TLYFLLIASD YLSIKGLLDL GVKKAADLIR GKSPEQIRTT FNIQNDFTPE EEAEFRKEYS WVFDEGI

Best Arabidopsis Sequence Match ( AT2G25700.1 )
(BLAST)

001: MAETKKMIIL KSSDGESFEV EEAVAVESQT IKHMIEDDCV DNGIPLPNVT GAILAKVIEY CKKHVEAAAE AGGDKDFYGS TENHELKTWD NDFVKVDHPT
101: LFDLLRAANY LNISGLLDLT CKAVADQMRG KTPAQMREHF NIKNDYTPEE EAEVRNENRW AFE

Arabidopsis Description

ASK3SKP1-like protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL93]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.