Factsheet for TraesCS3B01G340100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G340200.1	Wheat	cytosol	66.54	82.97
HORVU3Hr1G074970.1	Barley	cytosol, nucleus	37.88	78.17
OQU90298	Sorghum	cytosol	32.31	48.14
TraesCS5B01G331700.1	Wheat	cytosol	14.62	44.97
TraesCS6B01G004300.1	Wheat	cytosol	13.85	44.17
TraesCS3B01G027600.1	Wheat	cytosol	13.65	43.03
TraesCS3B01G308600.1	Wheat	cytosol	13.46	42.94
TraesCS7B01G098900.1	Wheat	cytosol	14.42	42.86
TraesCS2B01G590600.1	Wheat	cytosol	14.23	42.53
TraesCS5B01G169700.1	Wheat	cytosol	16.35	42.5
CDY03015	Canola	cytosol	12.31	42.38
TraesCS3B01G566400.1	Wheat	cytosol	11.54	41.96
TraesCS6B01G053400.1	Wheat	cytosol	10.96	41.61
TraesCS5B01G474100.1	Wheat	cytosol	12.88	41.36
PGSC0003DMT400088621	Potato	cytosol	9.23	41.03
TraesCS5B01G331600.1	Wheat	cytosol	12.69	40.99
VIT_19s0085g00180.t01	Wine grape	cytosol	11.92	40.79
TraesCS5B01G165700.1	Wheat	cytosol	13.46	40.0
PGSC0003DMT400038385	Potato	cytosol	11.54	39.74
TraesCS5B01G099600.1	Wheat	cytosol	13.27	39.43
TraesCS3B01G092200.1	Wheat	cytosol	12.5	39.16
VIT_15s0045g00490.t01	Wine grape	cytosol	11.15	38.41
VIT_19s0085g00190.t01	Wine grape	cytosol	11.54	38.22
TraesCS2B01G442100.1	Wheat	mitochondrion	13.08	38.2
PGSC0003DMT400090609	Potato	cytosol	10.96	37.75
PGSC0003DMT400093573	Potato	cytosol	10.96	37.75
PGSC0003DMT400088820	Potato	cytosol	10.96	37.75
PGSC0003DMT400095953	Potato	cytosol	11.35	37.34
Solyc03g112710.1.1	Tomato	cytosol	10.77	37.09
PGSC0003DMT400093419	Potato	cytosol	10.77	37.09
PGSC0003DMT400088220	Potato	cytosol	10.58	36.42
Solyc11g008230.1.1	Tomato	cytosol	10.96	36.08
PGSC0003DMT400087694	Potato	cytosol	10.38	36.0
TraesCS6B01G008800.1	Wheat	cytosol	12.12	36.0
PGSC0003DMT400097239	Potato	cytosol	10.38	35.76
GSMUA_Achr4P25750_001	Banana	cytosol	12.12	35.59
PGSC0003DMT400019185	Potato	cytosol	12.31	35.56
TraesCS4B01G337400.1	Wheat	cytosol	10.77	35.44
TraesCS7B01G492300.1	Wheat	cytosol	11.92	35.23
TraesCS7B01G492200.1	Wheat	cytosol	11.92	35.23
TraesCS5B01G372700.1	Wheat	cytosol	10.96	35.19
TraesCS6B01G024700.1	Wheat	cytosol	11.35	35.12
Solyc11g008400.1.1	Tomato	cytosol	12.12	35.0
Solyc11g008240.1.1	Tomato	cytosol	10.58	34.81
VIT_10s0003g05820.t01	Wine grape	cytosol	10.77	34.57
TraesCS3B01G406500.1	Wheat	cytosol	10.77	34.36
PGSC0003DMT400096238	Potato	cytosol	9.81	34.23
PGSC0003DMT400091657	Potato	cytosol	10.38	34.18
TraesCS7B01G492500.1	Wheat	cytosol	11.54	34.09
PGSC0003DMT400089461	Potato	cytosol	8.27	33.86
PGSC0003DMT400093338	Potato	cytosol	10.77	33.33
PGSC0003DMT400085217	Potato	cytosol	8.27	33.08
TraesCS7B01G492400.1	Wheat	cytosol	11.15	32.95
PGSC0003DMT400090072	Potato	cytosol	6.35	32.35
PGSC0003DMT400088079	Potato	cytosol	7.12	32.17
GSMUA_Achr4P25740_001	Banana	cytosol	9.04	31.76
PGSC0003DMT400019237	Potato	cytosol	10.96	30.16
PGSC0003DMT400085417	Potato	cytosol	7.12	29.37
PGSC0003DMT400086770	Potato	cytosol	7.12	29.37
Solyc11g008420.1.1	Tomato	cytosol	10.58	29.1
Solyc03g093190.1.1	Tomato	cytosol	6.73	28.69
TraesCS1B01G156000.1	Wheat	cytosol	12.88	28.39
KRH13748	Soybean	cytosol	9.62	27.32
PGSC0003DMT400096074	Potato	cytosol	7.88	23.84

Protein Annotations

EnsemblPlants:TraesCS3B01G340100.1	EnsemblPlantsGene:TraesCS3B01G340100	Gene3D:3.30.710.10	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf
InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	PANTHER:PTHR11165	PANTHER:PTHR11165:SF90	PFAM:PF01466	PFAM:PF03931
SEG:seg	SMART:SM00512	SUPFAM:SSF54695	SUPFAM:SSF81382	MapMan:19.2.2.8.1.1	:

Description

No Description!

Coordinates

chr3B:-:545812780..545814342

Molecular Weight (calculated)

56665.4 Da

IEP (calculated)

4.568

GRAVY (calculated)

-0.547

Length

520 amino acids

Sequence
(BLAST)

001: MAAEEKQEMG AGAGAAVGEK GPATAYRAMG KTGPTEEEKG DAAADKGKGS TAEKEEKGAT AGNEEDGEEE EEEERATAER KGENRLASAK RGHKKKAEAE
101: ETEGMFTWFS EIALSEKGTA AAERESRERR RFRSTKGQRP EEKGAMEEVA GKKEIFFFKA SAVITLESSD GMLFTVSEEA ARLSVPLADM IDQGCGGGII
201: QIPNVDARAL ATVIKYCNKH ADAASANPEA SEEALKEWDR KLVHGLSQDA LCDVVIAAQF LHIKGLLDAA CQKVAVEDMV NCKTRGQMHQ IEREDMCTWF
301: SGLTFSEKGT AAADGARERR RFKRTKCQRP EKKGAMAEET EQVAGENNTF FFRASGKIIT LMSSDGMLFK VSEAAARLSV LLADMIDEGC AGGIIPLPNV
401: DARALAMVIE YCNKHADAAF ANSRVDEGSS SSNSEASEEA LMEWDRKLVD GLSQDALYDL MMAANFLHIK GLLDAACQKV ADNVKGYSVE QMREMFGIAN
501: DFTEEEEEEL RKESPWAFEE

Best Arabidopsis Sequence Match ( AT4G34210.1 )
(BLAST)

001: MSSKMIVLMS SDGQSFEVEE AVAIQSQTIA HMVEDDCVAD GIPLANVESK ILVKVIEYCK KHHVDEANPI SEEDLNNWDE KFMDLEQSTI FELILAANYL
101: NIKSLLDLTC QTVADMIKGK TPEEIRSTFN IENDFTPEEE EAVRKENQWA FE

Arabidopsis Description

ASK11SKP1-like protein 11 [Source:UniProtKB/Swiss-Prot;Acc:O49484]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.