Factsheet for PGSC0003DMT400019237

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g008420.1.1	Tomato	cytosol	84.66	84.66
PGSC0003DMT400095953	Potato	cytosol	47.09	56.33
PGSC0003DMT400091657	Potato	cytosol	46.56	55.7
PGSC0003DMT400089461	Potato	cytosol	37.04	55.12
PGSC0003DMT400090072	Potato	cytosol	29.1	53.92
TraesCS2D01G560700.1	Wheat	cytosol	37.57	43.29
PGSC0003DMT400038385	Potato	cytosol	34.39	43.05
TraesCS2D01G560300.1	Wheat	cytosol	36.51	42.07
TraesCS2D01G560400.1	Wheat	cytosol	36.51	42.07
TraesCS2D01G560500.1	Wheat	cytosol	36.51	42.07
PGSC0003DMT400024783	Potato	cytosol	33.33	42.0
PGSC0003DMT400087694	Potato	cytosol	33.33	42.0
PGSC0003DMT400090609	Potato	cytosol	33.33	41.72
PGSC0003DMT400093573	Potato	cytosol	33.33	41.72
PGSC0003DMT400085217	Potato	cytosol	28.57	41.54
TraesCS4A01G366400.1	Wheat	cytosol	35.98	41.46
PGSC0003DMT400019185	Potato	cytosol	39.15	41.11
PGSC0003DMT400088820	Potato	cytosol	32.8	41.06
EER99267	Sorghum	cytosol	37.57	41.04
TraesCS6D01G045500.1	Wheat	cytosol	36.51	40.83
TraesCS6D01G044400.1	Wheat	cytosol	29.1	40.74
PGSC0003DMT400068727	Potato	cytosol	32.28	40.67
TraesCS7B01G098900.1	Wheat	cytosol	37.57	40.57
PGSC0003DMT400015827	Potato	cytosol	33.86	40.51
TraesCS3B01G308600.1	Wheat	cytosol	34.92	40.49
PGSC0003DMT400015825	Potato	cytosol	33.33	40.38
TraesCS7D01G016900.1	Wheat	cytosol	35.98	40.24
TraesCS2B01G590600.1	Wheat	cytosol	37.04	40.23
TraesCS3B01G566400.1	Wheat	cytosol	30.16	39.86
PGSC0003DMT400093419	Potato	cytosol	31.75	39.74
EES06093	Sorghum	cytosol	35.45	39.65
OQU87046	Sorghum	cytosol	28.04	39.55
TraesCS4A01G472600.1	Wheat	cytosol	35.98	39.53
TraesCS7A01G020600.1	Wheat	cytosol	35.98	39.53
TraesCS5B01G474100.1	Wheat	cytosol	33.86	39.51
TraesCS2D01G420100.1	Wheat	cytosol	36.51	39.43
TraesCS5D01G475400.1	Wheat	golgi, plastid, unclear	36.51	39.43
TraesCS5D01G475600.1	Wheat	cytosol	36.51	39.43
TraesCS7D01G194900.1	Wheat	cytosol	36.51	39.43
TraesCS6A01G000300.1	Wheat	cytosol	33.86	39.26
TraesCS6B01G004300.1	Wheat	cytosol	33.86	39.26
TraesCS3D01G509600.1	Wheat	cytosol	35.45	38.95
Os11t0456300-01	Rice	plasma membrane	35.45	38.73
PGSC0003DMT400068726	Potato	cytosol	30.69	38.67
PGSC0003DMT400088220	Potato	cytosol	30.69	38.41
PGSC0003DMT400097239	Potato	cytosol	30.69	38.41
TraesCS6D01G001600.1	Wheat	cytosol	35.45	38.29
VIT_10s0003g05820.t01	Wine grape	cytosol	32.8	38.27
PGSC0003DMT400088079	Potato	cytosol	23.28	38.26
PGSC0003DMT400068720	Potato	cytosol	30.16	38.26
EES09697	Sorghum	cytosol	35.45	38.07
Zm00001d049230_P001	Maize	mitochondrion	35.45	38.07
TraesCS6B01G053400.1	Wheat	cytosol	27.51	37.96
CDY03015	Canola	cytosol	30.16	37.75
HORVU5Hr1G110810.1	Barley	cytosol	30.69	37.66
TraesCS7A01G193600.1	Wheat	cytosol	26.98	37.5
TraesCS5A01G462800.1	Wheat	cytosol	26.45	37.31
Os09t0539500-01	Rice	cytosol, plasma membrane, plastid	34.39	37.14
HORVU5Hr1G110720.2	Barley	cytosol	34.92	37.08
HORVU5Hr1G110850.1	Barley	cytosol	34.92	37.08
TraesCS2B01G442100.1	Wheat	mitochondrion	34.92	37.08
TraesCS7A01G498800.1	Wheat	cytosol	32.28	36.97
EES13900	Sorghum	cytosol	32.8	36.9
VIT_19s0085g00180.t01	Wine grape	cytosol	29.63	36.84
TraesCS1D01G201900.1	Wheat	cytosol	32.28	36.75
HORVU5Hr1G110840.1	Barley	cytosol	33.86	36.36
TraesCS3D01G077800.1	Wheat	cytosol	32.28	36.31
TraesCS3B01G092200.1	Wheat	cytosol	31.75	36.14
Os08t0375500-00	Rice	cytosol	32.28	36.09
Os08t0375700-00	Rice	cytosol	32.28	36.09
HORVU5Hr1G110800.1	Barley	cytosol	33.86	35.96
HORVU5Hr1G110820.2	Barley	cytosol	33.86	35.96
Os09t0273800-01	Rice	cytosol	31.75	35.93
PGSC0003DMT400088621	Potato	cytosol	22.22	35.9
HORVU5Hr1G110830.3	Barley	cytosol	33.86	35.75
HORVU2Hr1G115410.2	Barley	cytosol	31.75	35.71
PGSC0003DMT400086770	Potato	cytosol	23.81	35.71
HORVU5Hr1G090360.1	Barley	cytosol	33.33	35.39
TraesCS2A01G522300.1	Wheat	cytosol	32.8	35.23
Zm00001d022618_P001	Maize	cytosol	31.75	35.09
Os09t0274800-00	Rice	cytosol	31.75	34.88
TraesCS5B01G099600.1	Wheat	cytosol	32.28	34.86
HORVU5Hr1G110760.2	Barley	cytosol	29.1	34.59
TraesCS6D01G002600.1	Wheat	cytosol	31.75	34.29
HORVU7Hr1G099950.1	Barley	cytosol	31.22	34.1
TraesCS7B01G492200.1	Wheat	cytosol	31.75	34.09
HORVU2Hr1G115400.1	Barley	cytosol	31.75	33.9
HORVU2Hr1G115380.1	Barley	cytosol	32.28	33.89
HORVU7Hr1G103140.2	Barley	cytosol	32.28	33.89
Os06t0113800-00	Rice	cytosol	29.63	33.73
HORVU7Hr1G099840.1	Barley	cytosol	31.22	33.71
TraesCS7B01G492300.1	Wheat	cytosol	31.22	33.52
HORVU2Hr1G115420.1	Barley	cytosol	31.22	33.33
HORVU3Hr1G089860.3	Barley	cytosol	31.75	33.33
Os09t0412050-00	Rice	cytosol	29.63	33.33
PGSC0003DMT400085417	Potato	cytosol	22.22	33.33
TraesCS5A01G093500.1	Wheat	cytosol	29.1	33.33
TraesCS7A01G565700.1	Wheat	cytosol	30.16	33.33
TraesCS6B01G008800.1	Wheat	cytosol	30.69	33.14
VIT_19s0085g00190.t01	Wine grape	cytosol	27.51	33.12
GSMUA_Achr4P25740_001	Banana	cytosol	25.93	33.11
TraesCS7A01G565800.1	Wheat	cytosol	30.69	32.95
TraesCS7B01G492500.1	Wheat	cytosol	30.69	32.95
TraesCS4B01G337400.1	Wheat	cytosol	27.51	32.91
KRH13748	Soybean	cytosol	31.75	32.79
GSMUA_Achr4P25750_001	Banana	cytosol	30.69	32.77
HORVU7Hr1G099860.2	Barley	cytosol, mitochondrion, nucleus	30.16	32.57
TraesCS5B01G165700.1	Wheat	cytosol	30.16	32.57
Os09t0275200-01	Rice	cytosol	27.51	32.5
TraesCS5D01G173200.1	Wheat	cytosol	30.69	32.22
TraesCS5D01G105800.1	Wheat	cytosol	24.87	32.19
TraesCS7D01G545000.2	Wheat	cytosol	29.1	32.16
PGSC0003DMT400093338	Potato	cytosol	28.57	32.14
TraesCS6B01G024700.1	Wheat	cytosol	28.57	32.14
HORVU7Hr1G002220.1	Barley	cytosol, plastid	35.45	31.9
TraesCS5A01G168900.1	Wheat	cytosol	30.69	31.87
PGSC0003DMT400096238	Potato	cytosol	24.87	31.54
TraesCS7D01G544900.1	Wheat	cytosol	23.81	31.47
Zm00001d007590_P001	Maize	cytosol	31.22	31.38
TraesCS7B01G492400.1	Wheat	cytosol	29.1	31.25
HORVU5Hr1G110790.1	Barley	cytosol	16.93	31.07
Zm00001d007586_P001	Maize	cytosol	31.22	30.73
Os07t0625500-01	Rice	cytosol	28.04	30.46
Zm00001d007589_P001	Maize	cytosol	31.22	30.41
Os07t0625600-00	Rice	cytosol	28.57	30.34
TraesCS2D01G524400.1	Wheat	cytosol	25.93	30.25
Zm00001d007659_P001	Maize	cytosol	30.69	30.21
TraesCS5D01G176900.1	Wheat	cytosol	31.22	30.1
OQU76826	Sorghum	cytosol	27.51	30.06
TraesCS6A01G016900.1	Wheat	cytosol	28.04	29.78
TraesCS5B01G372700.1	Wheat	cytosol	25.4	29.63
PGSC0003DMT400094745	Potato	cytosol	16.4	29.52
TraesCS5A01G172300.1	Wheat	cytosol	30.69	29.44
TraesCS5D01G379900.1	Wheat	cytosol	22.75	29.25
VIT_15s0045g00490.t01	Wine grape	cytosol	23.28	29.14
TraesCS5B01G169700.1	Wheat	cytosol	30.69	29.0
TraesCS3A01G374400.1	Wheat	cytosol	24.87	28.83
TraesCS2A01G574500.1	Wheat	cytosol	25.4	28.57
TraesCS3B01G406500.1	Wheat	cytosol	24.34	28.22
TraesCS6D01G020500.1	Wheat	cytosol	23.28	28.21
Os07t0624900-00	Rice	cytosol	29.1	27.5
HORVU5Hr1G092210.1	Barley	cytosol	23.28	27.33
TraesCS6A01G017300.1	Wheat	cytosol	22.22	26.92
TraesCS4A01G379700.1	Wheat	cytosol	21.16	26.85
Os10t0438100-00	Rice	cytosol	29.1	25.0
PGSC0003DMT400096074	Potato	cytosol	22.22	24.42
Zm00001d042677_P001	Maize	plastid	32.8	23.48
TraesCS1A01G129800.1	Wheat	cytosol	28.57	22.88
TraesCS1B01G156000.1	Wheat	cytosol	28.57	22.88
TraesCS1D01G138400.1	Wheat	cytosol	28.57	22.69
HORVU7Hr1G099790.1	Barley	cytosol, plastid	23.28	22.34
HORVU1Hr1G035930.1	Barley	cytosol	28.04	21.9
EER94185	Sorghum	cytosol	24.34	21.8
Os02t0101600-00	Rice	cytosol	18.52	21.74
HORVU3Hr1G074970.1	Barley	cytosol, nucleus	21.69	16.27
OQU90298	Sorghum	cytosol	26.98	14.61
TraesCS3B01G340200.1	Wheat	cytosol	26.98	12.23
TraesCS3B01G340100.1	Wheat	nucleus	30.16	10.96
TraesCS3D01G305500.1	Wheat	cytosol	28.57	10.57
TraesCS3A01G297000.1	Wheat	cytosol	29.1	10.38

Protein Annotations

EntrezGene:107063502	MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	GO:GO:0005575	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0019538
UniProt:M1ABT3	PFAM:PF01466	PFAM:PF03931	EnsemblPlantsGene:PGSC0003DMG400007436	PGSC:PGSC0003DMG400007436	EnsemblPlants:PGSC0003DMT400019237
PIRSF:PIRSF028729	PANTHER:PTHR11165	PANTHER:PTHR11165:SF86	InterPro:SKP1	InterPro:SKP1-like	InterPro:SKP1-like_dim_sf
InterPro:SKP1/BTB/POZ_sf	SMART:SM00512	SUPFAM:SSF54695	SUPFAM:SSF81382	InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer
TMHMM:TMhelix	UniParc:UPI000295A24A	RefSeq:XP_015170917.1	SEG:seg	:	:

Description

SLF-interacting SKP1 [Source:PGSC_GENE;Acc:PGSC0003DMG400007436]

Coordinates

chr11:+:3628963..3629841

Molecular Weight (calculated)

21016.1 Da

IEP (calculated)

3.968

GRAVY (calculated)

-0.503

Length

189 amino acids

Sequence
(BLAST)

001: MASSSSAPES KILTLKSADN DEFQVEASIA VQSIAIKNMV EDGYTDIPLV NISSEVLIKI IDYLTKHAEK SGCSEDELKE FDDEFVKMSI KKMSLFVYAA
101: NFLHIAGLTS LLCQAIADKI KNKSVNAVRR IFNITGDYTP EEEAEIRAEH DWAHEGELDE TADEDDVVRD ENEGESDDND TSEEETGEN

Best Arabidopsis Sequence Match ( AT1G20140.1 )
(BLAST)

001: MAETKKMIIL KSSDGESFEI EEAVAVKSQT IKHMIEDDCA DNGIPLPNVT GAILAKVIEY CKKHVEAAAE AGGDKDFYGS AENDELKNWD SEFVKVDQPT
101: LFDLILAANY LNIGGLLDLT CKAVADQMRG KTPEQMRAHF NIKNDYTPEE EAEVRNENKW AFE

Arabidopsis Description

ASK4SK4 [Source:UniProtKB/TrEMBL;Acc:A0A178W187]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.