Factsheet for TraesCS3B01G566400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

cytosol: 23065282
plasma membrane: 23065282

gfp PMID: 23065282 doi

MJ Hong, DY Kim, YW Seo

Division of Biotechnology, Korea University, Anam-Dong, Seongbuk-Gu, Seoul, 136-701, Republic of Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G053400.1	Wheat	cytosol	86.01	89.78
TraesCS5B01G474100.1	Wheat	cytosol	90.91	80.25
TraesCS3D01G509600.1	Wheat	cytosol	96.5	80.23
TraesCS7B01G098900.1	Wheat	cytosol	94.41	77.14
TraesCS2B01G590600.1	Wheat	cytosol	92.31	75.86
TraesCS2B01G442100.1	Wheat	mitochondrion	92.31	74.16
TraesCS3B01G308600.1	Wheat	cytosol	83.92	73.62
TraesCS6B01G004300.1	Wheat	cytosol	82.52	72.39
HORVU5Hr1G110850.1	Barley	cytosol	86.01	69.1
HORVU5Hr1G110720.2	Barley	cytosol	84.62	67.98
PGSC0003DMT400088621	Potato	cytosol	50.35	61.54
TraesCS5B01G331700.1	Wheat	cytosol	71.33	60.35
TraesCS7B01G492200.1	Wheat	cytosol	69.23	56.25
TraesCS7B01G492300.1	Wheat	cytosol	69.23	56.25
TraesCS3B01G027600.1	Wheat	cytosol	64.34	55.76
TraesCS7B01G492500.1	Wheat	cytosol	68.53	55.68
TraesCS5B01G165700.1	Wheat	cytosol	67.83	55.43
TraesCS5B01G099600.1	Wheat	cytosol	67.13	54.86
PGSC0003DMT400038385	Potato	cytosol	57.34	54.3
Solyc03g112710.1.1	Tomato	cytosol	57.34	54.3
TraesCS7B01G492400.1	Wheat	cytosol	66.43	53.98
PGSC0003DMT400090609	Potato	cytosol	56.64	53.64
TraesCS5B01G331600.1	Wheat	cytosol	59.44	52.8
PGSC0003DMT400093573	Potato	cytosol	55.24	52.32
TraesCS6B01G008800.1	Wheat	cytosol	63.64	52.0
PGSC0003DMT400088820	Potato	cytosol	54.55	51.66
PGSC0003DMT400088220	Potato	cytosol	54.55	51.66
TraesCS6B01G024700.1	Wheat	cytosol	60.14	51.19
PGSC0003DMT400093419	Potato	cytosol	53.15	50.33
PGSC0003DMT400087694	Potato	cytosol	51.75	49.33
TraesCS3B01G406500.1	Wheat	cytosol	55.94	49.08
PGSC0003DMT400097239	Potato	cytosol	51.75	49.01
CDY03015	Canola	cytosol	51.75	49.01
Solyc03g093190.1.1	Tomato	cytosol	40.56	47.54
PGSC0003DMT400085217	Potato	cytosol	42.66	46.92
TraesCS4B01G337400.1	Wheat	cytosol	50.35	45.57
VIT_19s0085g00180.t01	Wine grape	cytosol	48.25	45.39
PGSC0003DMT400086770	Potato	cytosol	39.86	45.24
PGSC0003DMT400088079	Potato	cytosol	35.66	44.35
TraesCS5B01G169700.1	Wheat	cytosol	61.54	44.0
PGSC0003DMT400096238	Potato	cytosol	44.76	42.95
PGSC0003DMT400085417	Potato	cytosol	37.76	42.86
PGSC0003DMT400089461	Potato	cytosol	37.76	42.52
VIT_10s0003g05820.t01	Wine grape	cytosol	46.85	41.36
GSMUA_Achr4P25740_001	Banana	cytosol	42.66	41.22
Solyc11g008230.1.1	Tomato	cytosol	44.76	40.51
PGSC0003DMT400093338	Potato	cytosol	47.55	40.48
TraesCS3B01G092200.1	Wheat	cytosol	46.85	40.36
TraesCS5B01G372700.1	Wheat	cytosol	44.06	38.89
VIT_15s0045g00490.t01	Wine grape	cytosol	40.56	38.41
PGSC0003DMT400096074	Potato	cytosol	45.45	37.79
VIT_19s0085g00190.t01	Wine grape	cytosol	41.26	37.58
PGSC0003DMT400095953	Potato	cytosol	41.26	37.34
PGSC0003DMT400091657	Potato	cytosol	41.26	37.34
GSMUA_Achr4P25750_001	Banana	cytosol	45.45	36.72
PGSC0003DMT400019185	Potato	cytosol	46.15	36.67
Solyc11g008400.1.1	Tomato	cytosol	45.45	36.11
PGSC0003DMT400090072	Potato	cytosol	24.48	34.31
KRH13748	Soybean	cytosol	43.36	33.88
Solyc11g008240.1.1	Tomato	cytosol	35.66	32.28
TraesCS1B01G156000.1	Wheat	cytosol	51.05	30.93
PGSC0003DMT400019237	Potato	cytosol	39.86	30.16
Solyc11g008420.1.1	Tomato	cytosol	38.46	29.1
TraesCS3B01G340200.1	Wheat	cytosol	40.56	13.91
TraesCS3B01G340100.1	Wheat	nucleus	41.96	11.54

Protein Annotations

MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019538	PFAM:PF01466	PFAM:PF03931	PIRSF:PIRSF028729	PANTHER:PTHR11165
PANTHER:PTHR11165:SF89	InterPro:SKP1	InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf	SMART:SM00512
SUPFAM:SSF54695	SUPFAM:SSF81382	InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	EnsemblPlantsGene:TraesCS3B01G566400	EnsemblPlants:TraesCS3B01G566400.1

Description

No Description!

Coordinates

chr3B:-:798408352..798408783

Molecular Weight (calculated)

15929.6 Da

IEP (calculated)

4.292

GRAVY (calculated)

-0.454

Length

143 amino acids

Sequence
(BLAST)

001: MESQTIRHMI EDDCADNGIP LPNVDSKILA KVIEYCKKHV QASTNPADSG AADANSSTST APAEDLKSFD AEFVKVDQAT LFDFILAANY LNIKGLLDLT
101: CQTVADMIKG KTPEEIRKTF NIKNDFTPEE EAEIRRENQW AFE

Best Arabidopsis Sequence Match ( AT1G20140.1 )
(BLAST)

001: MAETKKMIIL KSSDGESFEI EEAVAVKSQT IKHMIEDDCA DNGIPLPNVT GAILAKVIEY CKKHVEAAAE AGGDKDFYGS AENDELKNWD SEFVKVDQPT
101: LFDLILAANY LNIGGLLDLT CKAVADQMRG KTPEQMRAHF NIKNDYTPEE EAEVRNENKW AFE

Arabidopsis Description

ASK4SK4 [Source:UniProtKB/TrEMBL;Acc:A0A178W187]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.