Factsheet for PGSC0003DMT400088820

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
golgi 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400090609	Potato	cytosol	94.04	94.04
PGSC0003DMT400038385	Potato	cytosol	93.38	93.38
PGSC0003DMT400093573	Potato	cytosol	92.72	92.72
PGSC0003DMT400088079	Potato	cytosol	68.87	90.43
PGSC0003DMT400088220	Potato	cytosol	90.07	90.07
PGSC0003DMT400088621	Potato	cytosol	69.54	89.74
PGSC0003DMT400086770	Potato	cytosol	74.83	89.68
PGSC0003DMT400085417	Potato	cytosol	73.51	88.1
PGSC0003DMT400097239	Potato	cytosol	88.08	88.08
PGSC0003DMT400087694	Potato	cytosol	87.42	88.0
PGSC0003DMT400085217	Potato	cytosol	74.83	86.92
PGSC0003DMT400093419	Potato	cytosol	85.43	85.43
PGSC0003DMT400096238	Potato	cytosol	66.23	67.11
PGSC0003DMT400093338	Potato	cytosol	68.87	61.9
PGSC0003DMT400068727	Potato	cytosol	58.28	58.67
PGSC0003DMT400024783	Potato	cytosol	57.62	58.0
PGSC0003DMT400015825	Potato	cytosol	57.62	55.77
TraesCS4A01G366400.1	Wheat	cytosol	60.26	55.49
PGSC0003DMT400068726	Potato	cytosol	54.97	55.33
OQU87046	Sorghum	cytosol	49.01	55.22
TraesCS2D01G560400.1	Wheat	cytosol	59.6	54.88
TraesCS2D01G560500.1	Wheat	cytosol	59.6	54.88
TraesCS6B01G053400.1	Wheat	cytosol	49.67	54.74
TraesCS3B01G566400.1	Wheat	cytosol	51.66	54.55
TraesCS2D01G560700.1	Wheat	cytosol	58.94	54.27
TraesCS6A01G000300.1	Wheat	cytosol	58.28	53.99
TraesCS6B01G004300.1	Wheat	cytosol	58.28	53.99
TraesCS5B01G474100.1	Wheat	cytosol	57.62	53.7
PGSC0003DMT400068720	Potato	cytosol	52.98	53.69
TraesCS2D01G560300.1	Wheat	cytosol	58.28	53.66
TraesCS7D01G016900.1	Wheat	cytosol	59.6	53.25
TraesCS5A01G462800.1	Wheat	cytosol	47.02	52.99
TraesCS6D01G045500.1	Wheat	cytosol	58.94	52.66
TraesCS4A01G472600.1	Wheat	cytosol	59.6	52.33
TraesCS7A01G020600.1	Wheat	cytosol	59.6	52.33
TraesCS3B01G308600.1	Wheat	cytosol	56.29	52.15
TraesCS5D01G475600.1	Wheat	cytosol	60.26	52.0
PGSC0003DMT400015827	Potato	cytosol	54.3	51.9
TraesCS2B01G590600.1	Wheat	cytosol	59.6	51.72
Os11t0456300-01	Rice	plasma membrane	58.94	51.45
TraesCS2D01G420100.1	Wheat	cytosol	59.6	51.43
TraesCS3D01G509600.1	Wheat	cytosol	58.28	51.16
EES09697	Sorghum	cytosol	59.6	51.14
Zm00001d049230_P001	Maize	mitochondrion	59.6	51.14
TraesCS5D01G475400.1	Wheat	golgi, plastid, unclear	58.94	50.86
TraesCS6D01G001600.1	Wheat	cytosol	58.94	50.86
TraesCS7D01G194900.1	Wheat	cytosol	58.94	50.86
EES06093	Sorghum	cytosol	56.29	50.3
TraesCS7B01G098900.1	Wheat	cytosol	58.28	50.29
TraesCS6D01G044400.1	Wheat	cytosol	44.37	49.63
TraesCS7A01G498800.1	Wheat	cytosol	53.64	49.09
EES13900	Sorghum	cytosol	54.3	48.81
HORVU5Hr1G110810.1	Barley	cytosol	49.67	48.7
Os09t0539500-01	Rice	cytosol, plasma membrane, plastid	56.29	48.57
TraesCS7A01G193600.1	Wheat	cytosol	43.71	48.53
TraesCS2B01G442100.1	Wheat	mitochondrion	56.95	48.31
TraesCS2A01G522300.1	Wheat	cytosol	56.29	48.3
HORVU5Hr1G110840.1	Barley	cytosol	55.63	47.73
PGSC0003DMT400096074	Potato	cytosol	54.3	47.67
HORVU2Hr1G115410.2	Barley	cytosol	52.32	47.02
EER99267	Sorghum	cytosol	53.64	46.82
HORVU5Hr1G110850.1	Barley	cytosol	54.97	46.63
HORVU5Hr1G110760.2	Barley	cytosol	49.01	46.54
HORVU5Hr1G110720.2	Barley	cytosol	54.3	46.07
HORVU5Hr1G110800.1	Barley	cytosol	53.64	45.51
HORVU5Hr1G110820.2	Barley	cytosol	53.64	45.51
HORVU5Hr1G110830.3	Barley	cytosol	53.64	45.25
HORVU2Hr1G115400.1	Barley	cytosol	52.98	45.2
HORVU5Hr1G090360.1	Barley	cytosol	52.98	44.94
HORVU2Hr1G115420.1	Barley	cytosol	52.32	44.63
HORVU2Hr1G115380.1	Barley	cytosol	52.98	44.44
Os08t0375500-00	Rice	cytosol	49.67	44.38
Os09t0273800-01	Rice	cytosol	49.01	44.31
HORVU3Hr1G089860.3	Barley	cytosol	52.32	43.89
TraesCS5D01G105800.1	Wheat	cytosol	42.38	43.84
Os08t0375700-00	Rice	cytosol	49.01	43.79
CDY03015	Canola	cytosol	43.71	43.71
TraesCS5B01G165700.1	Wheat	cytosol	50.33	43.43
HORVU7Hr1G103140.2	Barley	cytosol	51.66	43.33
HORVU7Hr1G099840.1	Barley	cytosol	49.67	42.86
HORVU7Hr1G099860.2	Barley	cytosol, mitochondrion, nucleus	49.67	42.86
Os09t0412050-00	Rice	cytosol	47.68	42.86
HORVU7Hr1G099950.1	Barley	cytosol	49.01	42.77
TraesCS2D01G524400.1	Wheat	cytosol	45.7	42.59
VIT_15s0045g00490.t01	Wine grape	cytosol	42.38	42.38
TraesCS6D01G002600.1	Wheat	cytosol	49.01	42.29
TraesCS5D01G173200.1	Wheat	cytosol	50.33	42.22
VIT_19s0085g00180.t01	Wine grape	cytosol	42.38	42.11
TraesCS7B01G492200.1	Wheat	cytosol	49.01	42.05
GSMUA_Achr4P25740_001	Banana	cytosol	41.06	41.89
Os09t0274800-00	Rice	cytosol	47.68	41.86
TraesCS5A01G093500.1	Wheat	cytosol	45.7	41.82
PGSC0003DMT400095953	Potato	cytosol	43.71	41.77
TraesCS4B01G337400.1	Wheat	cytosol	43.71	41.77
TraesCS5A01G168900.1	Wheat	cytosol	50.33	41.76
HORVU5Hr1G110790.1	Barley	cytosol	28.48	41.75
TraesCS5B01G099600.1	Wheat	cytosol	48.34	41.71
TraesCS7A01G565800.1	Wheat	cytosol	48.34	41.48
HORVU7Hr1G002220.1	Barley	cytosol, plastid	57.62	41.43
PGSC0003DMT400090072	Potato	cytosol	27.81	41.18
TraesCS7B01G492300.1	Wheat	cytosol	47.68	40.91
TraesCS7B01G492500.1	Wheat	cytosol	47.68	40.91
TraesCS7D01G544900.1	Wheat	cytosol	38.41	40.56
PGSC0003DMT400091657	Potato	cytosol	42.38	40.51
VIT_10s0003g05820.t01	Wine grape	cytosol	43.05	40.12
TraesCS7D01G545000.2	Wheat	cytosol	45.03	39.77
Zm00001d022618_P001	Maize	cytosol	45.03	39.77
Os06t0113800-00	Rice	cytosol	43.71	39.76
TraesCS5B01G372700.1	Wheat	cytosol	42.38	39.51
PGSC0003DMT400019185	Potato	cytosol	47.02	39.44
PGSC0003DMT400089461	Potato	cytosol	33.11	39.37
Zm00001d007590_P001	Maize	cytosol	49.01	39.36
TraesCS7B01G492400.1	Wheat	cytosol	45.7	39.2
Os07t0625600-00	Rice	cytosol	45.7	38.76
TraesCS6A01G016900.1	Wheat	cytosol	45.7	38.76
TraesCS3A01G374400.1	Wheat	cytosol	41.72	38.65
TraesCS7A01G565700.1	Wheat	cytosol	43.71	38.6
Zm00001d007659_P001	Maize	cytosol	49.01	38.54
TraesCS6B01G008800.1	Wheat	cytosol	44.37	38.29
Zm00001d007589_P001	Maize	cytosol	49.01	38.14
TraesCS5D01G379900.1	Wheat	cytosol	37.09	38.1
TraesCS6B01G024700.1	Wheat	cytosol	42.38	38.1
TraesCS3B01G092200.1	Wheat	cytosol	41.72	37.95
TraesCS5D01G176900.1	Wheat	cytosol	49.01	37.76
VIT_19s0085g00190.t01	Wine grape	cytosol	39.07	37.58
TraesCS5A01G172300.1	Wheat	cytosol	49.01	37.56
Zm00001d007586_P001	Maize	cytosol	47.68	37.5
TraesCS3B01G406500.1	Wheat	cytosol	40.4	37.42
PGSC0003DMT400094745	Potato	cytosol	25.83	37.14
TraesCS5B01G169700.1	Wheat	cytosol	49.01	37.0
TraesCS2A01G574500.1	Wheat	cytosol	41.06	36.9
TraesCS3D01G077800.1	Wheat	cytosol	41.06	36.9
HORVU5Hr1G092210.1	Barley	cytosol	39.07	36.65
TraesCS4A01G379700.1	Wheat	cytosol	35.76	36.24
TraesCS1D01G201900.1	Wheat	cytosol	39.74	36.14
OQU76826	Sorghum	cytosol	40.4	35.26
Os07t0625500-01	Rice	cytosol	40.4	35.06
GSMUA_Achr4P25750_001	Banana	cytosol	40.4	34.46
KRH13748	Soybean	cytosol	41.72	34.43
Os09t0275200-01	Rice	cytosol	36.42	34.38
TraesCS6D01G020500.1	Wheat	cytosol	34.44	33.33
PGSC0003DMT400019237	Potato	cytosol	41.06	32.8
TraesCS6A01G017300.1	Wheat	cytosol	33.77	32.69
Os07t0624900-00	Rice	cytosol	41.72	31.5
HORVU7Hr1G099790.1	Barley	cytosol, plastid	39.74	30.46
Os10t0438100-00	Rice	cytosol	43.71	30.0
Zm00001d042677_P001	Maize	plastid	51.66	29.55
TraesCS1A01G129800.1	Wheat	cytosol	44.37	28.39
TraesCS1D01G138400.1	Wheat	cytosol	44.37	28.15
TraesCS1B01G156000.1	Wheat	cytosol	43.71	27.97
Os02t0101600-00	Rice	cytosol	29.14	27.33
HORVU1Hr1G035930.1	Barley	cytosol	43.71	27.27
EER94185	Sorghum	cytosol	36.42	26.07
OQU90298	Sorghum	cytosol	43.05	18.62
HORVU3Hr1G074970.1	Barley	cytosol, nucleus	29.14	17.46
TraesCS3B01G340200.1	Wheat	cytosol	39.07	14.15
TraesCS3D01G305500.1	Wheat	cytosol	41.72	12.33
TraesCS3A01G297000.1	Wheat	cytosol	43.05	12.26
TraesCS3B01G340100.1	Wheat	nucleus	37.75	10.96

Protein Annotations

EntrezGene:102590461	MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	UniProt:M1DGS9	PFAM:PF01466	PFAM:PF03931
EnsemblPlantsGene:PGSC0003DMG400038391	PGSC:PGSC0003DMG400038391	EnsemblPlants:PGSC0003DMT400088820	PIRSF:PIRSF028729	PANTHER:PTHR11165	PANTHER:PTHR11165:SF89
InterPro:SKP1	InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf	SMART:SM00512	SUPFAM:SSF54695
SUPFAM:SSF81382	InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	UniParc:UPI000295227D	RefSeq:XP_006338557.1	:

Description

SKP1 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400038391]

Coordinates

chr2:-:47019857..47020312

Molecular Weight (calculated)

17437.9 Da

IEP (calculated)

4.822

GRAVY (calculated)

-0.417

Length

151 amino acids

Sequence
(BLAST)

001: MTSSTKFLTL KTCDGKEFVL DEAIAIRSQT IKNMVEDDCV SNVIPLPNVH SKTMTKVIEY WKKHSEEGVS KGMLMDFDKA FVNVHHSILH ALILAANFLN
101: DKEILDMMCQ EIADRIKGKT PEEIRKEFDI KNDFTPEEEE EIRKENAWAF E

Best Arabidopsis Sequence Match ( AT1G20140.1 )
(BLAST)

001: MAETKKMIIL KSSDGESFEI EEAVAVKSQT IKHMIEDDCA DNGIPLPNVT GAILAKVIEY CKKHVEAAAE AGGDKDFYGS AENDELKNWD SEFVKVDQPT
101: LFDLILAANY LNIGGLLDLT CKAVADQMRG KTPEQMRAHF NIKNDYTPEE EAEVRNENKW AFE

Arabidopsis Description

ASK4SK4 [Source:UniProtKB/TrEMBL;Acc:A0A178W187]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.